Equa028875.1
Basic Information
- Insect
- Euplagia quadripunctaria
- Gene Symbol
- F56D1.1
- Assembly
- GCA_963859945.1
- Location
- OY982585.1:1756461-1759300[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00023 0.024 16.1 0.4 1 23 237 260 237 260 0.94 2 17 0.00026 0.026 15.9 5.4 1 23 265 287 265 287 0.98 3 17 8.6 8.6e+02 1.7 0.7 2 23 291 312 291 312 0.89 4 17 0.00094 0.094 14.2 0.5 1 23 317 340 317 340 0.95 5 17 0.017 1.7 10.2 0.5 2 23 401 423 400 423 0.93 6 17 0.00046 0.046 15.1 1.0 1 23 429 452 429 452 0.93 7 17 0.00064 0.064 14.7 0.7 1 21 455 475 455 476 0.94 8 17 0.021 2.1 9.9 0.5 1 23 484 507 484 507 0.94 9 17 0.042 4.2 9.0 0.2 2 23 548 569 547 569 0.96 10 17 0.00072 0.072 14.5 1.2 1 23 575 597 575 597 0.97 11 17 0.0097 0.97 11.0 2.0 1 23 633 655 633 655 0.96 12 17 0.0061 0.61 11.6 0.1 3 23 661 681 660 681 0.94 13 17 0.00011 0.011 17.1 1.4 2 23 700 722 699 722 0.96 14 17 0.0023 0.23 12.9 1.1 1 23 728 750 728 750 0.98 15 17 0.076 7.6 8.2 7.2 2 23 757 778 756 778 0.96 16 17 3e-05 0.003 18.9 2.1 1 23 784 807 784 807 0.97 17 17 3.8 3.8e+02 2.8 3.3 3 23 814 835 812 835 0.95
Sequence Information
- Coding Sequence
- atggcGGAAGTGGCGACAAATAACACTAATCACGACAATCTGGACTGGctgaaacacaaaataaaatcaatatgggTTTCATCAAAGTTCTGCGGCCTGTGCTTGGAGAACACAGGGAACTTTTGTTCTGTAGACATGGAGTTAGTTATAAACAAGCAGAAATTTTCGAGATGTCTTCAAGATATCATAAACTACGTATTTAACGATGATATTGAAAACTTCATGTCGAGTCATTATTTATGCGACGGCTgcacagaaaaaataattcaatcctACCTCTTCATACACAATACGAAACAACtttcaaaaataatgaataactGCGTCAGTGATTTATACTCCAAGGTCATTGATGTCAACGACCAAATAGGCAACTCCAGCAGTTCAACTGACTACGAGAATGCTAATGTCATGATCGTTCTAGAAACTGACACAGATTTGTGCAAAACTATTATGGATACAAAGATGACTGAGATTGTCCCAACTGCTACCCCCATAGCTATGAAGAAAGAAGAACCAGAAGTACCTGTCGTTGTGAAAGTTGAATCATATCAAAACCAGTTACCAACTCCAAAagaaccaataaaaaaaatatcaaccccTAAACCTTTAAAATCTGATGACACCCCcaacattacattaaaagaaGGTCATATTGTCATAAAACCGTTAAATTCAGCTAGGAATTTAACTCCACGTTACAACACCTATGAGTGTACGGGTTGCCCAGAAATCTTCACCACGTACAGATCTTTGAAGGAACATGAAAAGGCTAAACATAAGAAATCCGTCTTCCATTGCAACTTGTGCAATAAGTCGTATAATACCCGgcagtatttaaatattcactaCAAGACACATGCAAAAGCTAAATGCAAGTTTTGCCAAGTGGTTTTACCCGAGGGAGAACTAATGCATCATTTGAGAGCAAATCATGCTTATTTGGTATTTCCATGTAAGTTTTGTGACTTGGTTTACTACAGCCAAGACTCTTTAATAACACATTTCAATATAAGccatttagtaaataatactaaaataaaatcgcAGTGCATTATGTGTTTAAAAAGTTTCCAAGATGGTGAAATCAAGAAACATAAATGCAAGTTTAATTGTTCCGAGTGTTTTGTGATGCCTTGCGTTCATTACAAATACCTAATGTCTTATAGAGAGCAAACGCTGAATCAcgctaacaaaataaaatgcataGACTGTGATTATGTCACAAGAAGAAAGGAACATTTGATTGGTCACGTGAATAGAGAACATTTGGATCATCACCCATTTACTTGTGCTGATTGCGGTCAACAGTTCTACACAAAGTTGAGTTTAAAGACTCATATAGTGCAATTCCACCAAGAATTTAATTGCGAGTACTGCGATTTCGAATTTAAAGACAATAACAGTTTGGAAAACCACAAAAAGGCATGCAAGTCTGTTATAAGAGCGTTTAGCTGCAACCATTGTGTAGCATCCTTTGACGTAGAAGAAGAATTAACTACCCACGAGAATTTGAGACATAATGAGAGTGTTTACGCTTGCAATCTTTGCAAGAGTAAGTTCCTAACTGATCTGGAACTAGAAGAACACCACGCAAGAGTCCACGGAGGCATCCAATGTAAGAAACGAAGGAAGCGAATAGAATGTTCTCTATGTGACCTTTTATTCAGAAATATCAAAGAGTTATTACAACATGAGAAACTACATGACCAGAATGAGGTATATCCTTGTAAAGAGTGtccaaaacaatttaaaagtctAATGAAACTGTACATACACAGTCAAAGACATTACACAAATAGAATAAAGTGTCTTCGTTGTAACAAGAAAGTGGCAGCCTCATTCTACTCTCAACATGCTGTTCGCTGTCCGTACAAAAGAGATGGAGCGTTGAAACATGTTTGTGAAGTCTGCGGAAAGGCATTCCATCTTGAATCTCTTTTACGTTTCCACCAAAAGATTCATCTAGAACCGGAGCCTTGTCCTCAGTGTGACAAAATCATCAAGCCTTCTAGTTTAAAGAGACACATGGAGCAAGTTCACGGTGATACATCAGATAagcaaaaaagcaaaataatagcAAAACAACCTGCTATCGAATGTCAGATATGTGGTCATGTGGTTAGGAAAAAACATGATTTAGAAGCACACATGAACAGATACCATCTCAAAATTAAACCATATATTTGTCAAATATGTAACAAAGATTTTTGCGGGAAAATTCGTTTGAAAGAACATGTAGCAACTCACACTACTGACAATAATTGTTTCTGTTCCGTCTGTTTTAAGAAATTTGCAAACCGTGTGtgtttaaaaatgcattttagaATGCATACAGGGGAGTTGCCATACTCGTGTGATATTTGTGGACAGAAGTTCAGGTCTTCGAGTATGATGAAGACACACCGGTTAAAGAAACATTTGGATAAAACTGTATGCTGTCCGTTGTGTGATAGTATGTTTTATATGGTACGGGATATGAGGCATCACTTTAAGAAAGTCCATTGGAAGTTTAAGGATAGACCGTTCAATGTAAGAGAAGTTGAGGAACTAGGAGAACAGTTTTATCATTTGTTTGAAGATGGCAGATTACCAAAACTGGACACTTGA
- Protein Sequence
- MAEVATNNTNHDNLDWLKHKIKSIWVSSKFCGLCLENTGNFCSVDMELVINKQKFSRCLQDIINYVFNDDIENFMSSHYLCDGCTEKIIQSYLFIHNTKQLSKIMNNCVSDLYSKVIDVNDQIGNSSSSTDYENANVMIVLETDTDLCKTIMDTKMTEIVPTATPIAMKKEEPEVPVVVKVESYQNQLPTPKEPIKKISTPKPLKSDDTPNITLKEGHIVIKPLNSARNLTPRYNTYECTGCPEIFTTYRSLKEHEKAKHKKSVFHCNLCNKSYNTRQYLNIHYKTHAKAKCKFCQVVLPEGELMHHLRANHAYLVFPCKFCDLVYYSQDSLITHFNISHLVNNTKIKSQCIMCLKSFQDGEIKKHKCKFNCSECFVMPCVHYKYLMSYREQTLNHANKIKCIDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQEFNCEYCDFEFKDNNSLENHKKACKSVIRAFSCNHCVASFDVEEELTTHENLRHNESVYACNLCKSKFLTDLELEEHHARVHGGIQCKKRRKRIECSLCDLLFRNIKELLQHEKLHDQNEVYPCKECPKQFKSLMKLYIHSQRHYTNRIKCLRCNKKVAASFYSQHAVRCPYKRDGALKHVCEVCGKAFHLESLLRFHQKIHLEPEPCPQCDKIIKPSSLKRHMEQVHGDTSDKQKSKIIAKQPAIECQICGHVVRKKHDLEAHMNRYHLKIKPYICQICNKDFCGKIRLKEHVATHTTDNNCFCSVCFKKFANRVCLKMHFRMHTGELPYSCDICGQKFRSSSMMKTHRLKKHLDKTVCCPLCDSMFYMVRDMRHHFKKVHWKFKDRPFNVREVEELGEQFYHLFEDGRLPKLDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00441826;
- 90% Identity
- iTF_01502353;
- 80% Identity
- -