Equa029891.1
Basic Information
- Insect
- Euplagia quadripunctaria
- Gene Symbol
- -
- Assembly
- GCA_963859945.1
- Location
- OY982586.1:5703859-5710425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00038 0.039 15.4 1.1 1 23 117 140 117 140 0.95 2 19 0.031 3.1 9.4 1.3 2 23 171 192 170 192 0.95 3 19 0.0096 0.96 11.0 3.6 1 23 213 236 213 236 0.97 4 19 0.0004 0.04 15.3 0.3 1 23 241 264 241 264 0.93 5 19 6.7e-05 0.0067 17.8 0.9 1 23 269 292 269 292 0.97 6 19 0.14 14 7.3 1.1 2 23 298 320 297 320 0.94 7 19 3.1e-05 0.0031 18.8 4.4 1 23 328 351 328 351 0.98 8 19 0.0044 0.44 12.1 1.2 1 23 357 379 357 379 0.97 9 19 7.4e-05 0.0074 17.6 2.1 1 23 385 407 385 407 0.98 10 19 0.5 50 5.6 2.4 1 23 449 472 449 472 0.92 11 19 0.025 2.5 9.7 0.1 2 23 500 521 499 521 0.96 12 19 0.0093 0.93 11.0 5.6 1 23 542 565 542 565 0.95 13 19 8.6e-05 0.0086 17.4 0.5 2 23 571 592 570 592 0.96 14 19 0.00051 0.052 15.0 3.8 1 23 599 622 599 622 0.97 15 19 0.082 8.2 8.1 2.2 2 23 626 648 625 648 0.96 16 19 0.0044 0.44 12.1 1.6 1 23 655 678 655 678 0.97 17 19 0.064 6.4 8.4 0.1 3 23 686 706 685 706 0.96 18 19 6.9e-07 6.9e-05 24.0 2.4 1 23 712 734 712 734 0.99 19 19 4.8e-05 0.0048 18.2 1.8 1 23 740 762 740 762 0.98
Sequence Information
- Coding Sequence
- ATGTCCAGTTTGCGACAGAGCGTTCAAAGACAAAAAAACTATGAGCAAACACTGCAAAAACGTTCACCAGAGAGAGGAAACGAAAAAAGGAAGAAGAAAAAGACCGTGAAAGAAGAGGTTGAAGACTTATCTGTTTCAGAAGACAGAAATAGGAATAGAAAAAGAGTTATCGATGAAGATGATAATGATTCTTCCATTTCTGTTGGTAtaacaaagaagaagaaaaaaactgaaaaaacaaagaaaaaaactggTATTGAAGAAGAAGCTAAAAGAGAGACACGTCATCTCTTAACAGTTATTATAGAGACATCGACAGCAATGCCGTTTCGCAAAAATGGCAATACGTATAGGTGCTTCTATTgtgaaacaaatttttattacgCATCTGAATTAAGAGCTCACACCCTCAACGAACACAAGAATGAAACCAAGAGACAATTAAAACAGACCATCAAcagaaatgttgttaaaaaaaatcttatagttAAATTGGATGTGACCAATCTGACTTGCAAATTATGTTCTGAATCATTCGTCACTCTCAAAGACCTCATATTCCATTTCCGCAAACACGACAAAGTGGTAACTGATAATCTTGAAAACATGTTGTGTTTAAAACTATCTGATAATGAATTCAAATGCTTGTATTGTGATAAAGAATTTCCCTTCTTCAAGACtttgtatatacatttacacaGAGAGCATGTCAACAGACGTTTTATATGCGAAACTTGCGGCTTGAATTTCACTACAAACCAAGGGCTAAATAACCATACGGCTTATGTTCACAAGCAAGGTAGCTTCGTCTGTCCGGATTGTGGCAAAAAGTTTGCCGCTCAACATCTTCGTAGCGCACATATGAAACGTTCCCATGACCTAGACAACATAAAGTGCCATGTATGTAAGGTAATATTCAGAAGTGTAAATCAAAAAGAAACTCATTTGGCAAAAGAACATAACATTTGGATTTCAAAGGAATTCAAATGTGACAAGTGTTCCAAAAGCTTCAAATATAACCACATGCTAGTGACACACATCAAACGAgttcatttaaaagaaaagaacttTACATGTGATTACTGCGGAGATAAATTCTTTGAGAAAAAATTGCTGGAGTTGCATCAAATAAAACACAGTGATGCCAAACCTTATGAATGCAAAACCTGTTATAAACGATTTCCGAGGAAAAATGCTTTGTATAGACATGAGAAAATACATACGGATCCCCACGCGCAGGAGGAAACGGACACAGTATTGCAGACAATGAAACGAACGCGTCTACTATTAGTTGGTATTCTAGAAAATTCCACAGCTTTACCGTTCAGGAAGGTGGGCCAATCTTTCAGATGTTTTTATTGTCATACTAACATATATTTTGCTACGGAACTAAGAGCTCACTATGCAGAGAAACatcaaaacgaaaatataaaagtatgggTCAAAAGAAACgtaacaaaaagatttttcttagTAAAATTGGACATAACAAATCTAAGTTGCAAAATATGCTCTCAAGAGCTTGCTAATCTACAGGAATTAGCGATCCATCTACGCGAACATGACATAGTATTAAGCGACGATTTCGACAACGTAGtatgttttaaactttcggaCTATGAATTTaaatgcacatattgtacaaaacaGTATTCATTCTTCTCACAATTGTACTCCCATATCCAccaagaacatttaaaaaagccTTGTATCTGCCCTGTCTGTGGTTTAGGCTTCGTAGATGACCGAAACCTTAGCAGTCATATGAAAAAACATGCagacaaaaagaaaatttttgaTTGTAATATCTGcggaagaaaatatttcacggCACACAATCGAACCAATCACATGAAACGGTCTCACGGGGACAACAAATGTCACATCTGCAATCTAACGTTAAAAAGTGAATTTCAGAAAGAAAACCACATGGCTAAGGAGCATGACTTTTATATTAGAGAATTTAAATGCGATCGTTGCCCCaggaaatttatattaaacaaatttctagttacacatataaaaaaccAACACTTGAAGGAAAAAAACAGAGCTTGTGATGTCTGTGGAGCTAGATTTTTTGATATGGCAAGACTGAATCAACATAAAATCAGCCACAGTGATGAAAAACCTTTCAAATGTGATATTTGTGATAAAACTTTTGCTAGACGTAAAACTTATCGGCAACATTTGAGAATACATGCTGACGAGAGGAATTATATCTGCAAAGAATGCGGCAAAGCGTATGTACACCATAGCGGCCTTGCGTGGCATAAACAAAAGCACGGAAAAAATGAGAACGATGAACAAAATCTGAAGGAAACTACGAAGCTTGAGAAAACTATTACAAGCAACAAAACTATGACTATGGAGATGAGTACCACACCTGATAAAACGACGACAAAGCAAACTGAAATGTCTGACAAAACtcaataa
- Protein Sequence
- MSSLRQSVQRQKNYEQTLQKRSPERGNEKRKKKKTVKEEVEDLSVSEDRNRNRKRVIDEDDNDSSISVGITKKKKKTEKTKKKTGIEEEAKRETRHLLTVIIETSTAMPFRKNGNTYRCFYCETNFYYASELRAHTLNEHKNETKRQLKQTINRNVVKKNLIVKLDVTNLTCKLCSESFVTLKDLIFHFRKHDKVVTDNLENMLCLKLSDNEFKCLYCDKEFPFFKTLYIHLHREHVNRRFICETCGLNFTTNQGLNNHTAYVHKQGSFVCPDCGKKFAAQHLRSAHMKRSHDLDNIKCHVCKVIFRSVNQKETHLAKEHNIWISKEFKCDKCSKSFKYNHMLVTHIKRVHLKEKNFTCDYCGDKFFEKKLLELHQIKHSDAKPYECKTCYKRFPRKNALYRHEKIHTDPHAQEETDTVLQTMKRTRLLLVGILENSTALPFRKVGQSFRCFYCHTNIYFATELRAHYAEKHQNENIKVWVKRNVTKRFFLVKLDITNLSCKICSQELANLQELAIHLREHDIVLSDDFDNVVCFKLSDYEFKCTYCTKQYSFFSQLYSHIHQEHLKKPCICPVCGLGFVDDRNLSSHMKKHADKKKIFDCNICGRKYFTAHNRTNHMKRSHGDNKCHICNLTLKSEFQKENHMAKEHDFYIREFKCDRCPRKFILNKFLVTHIKNQHLKEKNRACDVCGARFFDMARLNQHKISHSDEKPFKCDICDKTFARRKTYRQHLRIHADERNYICKECGKAYVHHSGLAWHKQKHGKNENDEQNLKETTKLEKTITSNKTMTMEMSTTPDKTTTKQTEMSDKTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -