Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.1e-12 5.2e-09 36.6 0.0 4 39 147 183 144 187 0.89

2 4 3.9e-11 2.9e-08 34.3 0.3 2 39 199 236 198 240 0.92

3 4 7.1e-15 5.2e-12 46.2 0.1 2 45 254 298 253 298 0.96

4 4 0.06 44 4.9 0.1 1 13 305 317 305 317 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.1e-12	5.2e-09	36.6	0.0	4	39	147	183	144	187	0.89
2	4	3.9e-11	2.9e-08	34.3	0.3	2	39	199	236	198	240	0.92
3	4	7.1e-15	5.2e-12	46.2	0.1	2	45	254	298	253	298	0.96
4	4	0.06	44	4.9	0.1	1	13	305	317	305	317	0.92

Coding Sequence: ATGCCCGGCAACGGACTGTCGCTGGTGAAATGCGAACCGCCGTCTGACGAAGAAGACAGTAATTCACAGTTCGCGCGCAATTATCTATCTAGTCAGGACAGTGGTCTGGAAGAACTGGCACCGCTGGCGCCAGCGGGACCTGCTGCCACGCCGGTATGCGTCAAACAGGAACGAGCCTCACCCCCAGCTACGATGCTGGAGACTCTCGAGTCGGCACCCCATCATGCCAAGAGCACGTCATTATTGGACCGACATATGTCTACAATGAATGCGAGTGAAGGGCCTGACTTCAGAAACTTTGTACCACTCTTAGCTGTTAAAGATGAACCCTCATCAGAAGGAGAACAACCTCAGCTCAGTGGTGAAGACACAAGCGATTCTTGTGGCAGACAAATGTCACCTGCGCCTCGAAACAGCCCCAAGAGTTGGACGCAACAAGATATGGAACGAGCGTTGGACGCACTACGGAAACACCAGATGAGTCTTACTAAGgcaTCCGCAACTTATGGTATCCCTTCGACAACGCTATGGCAACGGGCGCACCGCCTCGGCATCGACACGCCGAAGAAAGAGGGAGCTGCCAAGTCTTGGAGCGAGGCCGACCTACGTGGGGCTCTTCACGCGTTGAGGGCGGGTGCTATATCTGCTAACAAAGCCAGCAAGGCTTATGGTATCCCAAGCAGCACGTTATACAAGATAGCTCGGCGCGAAGGAATCCGTCTGTCGGCGCCGTTCAACGCCGCGCCCACGTCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTCGCCGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCACCACCTACGGCATACCTACCGGTACACTGTACGGTCGATGTAAGCGCGAAGGTATAGAATTATCTCGGTCGAACCCCACCCCGTGGTCTGAGGATGCTATGGGAGAGGCACTCGAAGCAGTCAGGTAA
Protein Sequence: MPGNGLSLVKCEPPSDEEDSNSQFARNYLSSQDSGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHHAKSTSLLDRHMSTMNASEGPDFRNFVPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQMSPAPRNSPKSWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALAAIRCGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVR

Sequence clustering based on sequence similarity using MMseqs2