Evul025015.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000189.1:577985-583331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 1.9 9.8 2.6 2 23 370 391 369 391 0.94 2 12 0.00024 0.018 16.1 0.2 3 23 397 418 395 418 0.96 3 12 0.00012 0.0091 17.1 0.2 2 23 451 473 451 473 0.91 4 12 0.047 3.5 8.9 2.5 1 23 480 503 480 503 0.93 5 12 2 1.5e+02 3.8 2.6 1 13 507 519 507 521 0.82 6 12 2.9 2.2e+02 3.3 0.2 3 20 727 744 725 748 0.87 7 12 0.37 28 6.1 0.8 2 23 818 839 817 839 0.91 8 12 0.00051 0.038 15.1 0.1 3 23 845 866 843 866 0.95 9 12 0.22 17 6.8 0.2 3 21 872 890 871 891 0.95 10 12 0.0048 0.36 12.0 0.5 2 23 899 921 899 921 0.91 11 12 0.53 39 5.6 2.5 1 21 928 948 928 951 0.83 12 12 7.1e-05 0.0053 17.8 2.6 1 23 955 977 955 977 0.99
Sequence Information
- Coding Sequence
- ATGTACGGTAAAGATGAAGAATGGACGAGCGCAGAGGTCAAGATTGAGATACCTGTTGAATTCGAAAATAGCGTTGGTGCTAGTAATGAATGGATCACAACAGATTTAGCGGATCATGCCACGGTCGTCTCTAAAGTCACACAAGAATGTAGTAACACGGTAGATGACGAATGGGCTATACTCCCGCTTAATGCTGCAGAACAACCACCTACTGTAAAACCTAACCATTACCTAGACGACGACGGCACCGAGTGGGTAATCAATGATACCGTAATGGATACAGACACAGTCCAGAATAGCCCCGATTCCAATAACACACTAACTAAGACACAccaacaaaacataaaaagatATGGATTCGTCTCGAATCTTGCGCCAAACGTTTCAAGAGTCGGCAAGCCCGATTCCAAACTGACACGAACTGTGAGTCACCAACAAAATAACATGGAAGGATATCGATTTGTCTCAGAACTTGCGCCAAAACTTAACAAGCCCGCTTCTAAATTGACACGAAACTGGAGACGAGAAATCATTAAAGGATATCGGTTCGTCTCAAACCCTGCGCCGGCCATTTCAGGAGTTGACCAGTTGAAATTAAAAGGATATCGGCTCGTCTCAAATCCTGCGCCAGCCGTTTCAGGAGTTGATCAGTTGAAATGGAACCGTGTTCGGATCCAAGGAGCTGGTGAAATGTGGCTAAAGAGTTCCAAAAAACCCAGACCGTTGCTGGATACATCGACCCTTAGCAAAGCAGATCAAAACGCTGTGCTCTTAGTGCGTAACACTACAGCAATCCCTTATAGAATAGAGAACGTTAGATCAATCATTCCATGCTTTGCTTGCGGGCATAAATTTCTTGACCCTTTTCTATTCAAAGACCACTTTATTGCCGAGCATCAATCGGTGGACAAGGCCAATGGCCTTTATAGTAAAAACAGGATCCAGACGCGGGTCGATATAACGGACCTAAGCTGCCTCTTATGTACGCAATCGCTTGACAATTTAGACGAAGCTGCGGCTCATCTTGTCCAGATGCACAAAATGGGAATTGATCTGAACGAGAAACTCGGTTTGGTGCCGCTCAAGTTTCCAGAAAGAGGACTGTGTCAATGCACTGTCTGCGGGACTAAGTTTAGTGCATTTAGAGAACTGTACAGGCACTCTGGCACACATTTCGCGAACCAGATCTGCGAGGTGTGTGGCATGCAGTTTGAGACACCCTATACATTAAATTTGCATGTAAAAACAAAGCATGCTAAGGGACGGTTATGTATTAAGTGCAAAGCTATATTTCCTACCGGCGAGGAGCTAAGGCAACACGTAAAGGAAGAACGCTCTTGCAGTAATGGTTACTGCAAAATTTGCGATAAAGCCTTCGGATACTGGCAATCATTGCAGAAGCACAGAGAAGCTGTGCACGGTGCTGAAAAAAGGATTTATTCATGTTCAGTGTGTCAAAAAGTGTTTGAGAAACGCATGCAGATGTATTTGCATTTTAAACAAAAGCATACAGATTCTTACAAGTGTAAAATATGCAACAAAAAGGTTTGTGGTTCTTCAGATGAAGAATGGACGACCACAGAGGTGAACATTATGATTCCTGCTAAATTAGAAAACAGCAATAATCCCAGTAATGAATGGATCACGACCGATTCAGCGGATCATGCCAATATCGATGACTCTAAAGTCAAACAAGATTATTGTAAATCCGTAGATGACGAATGGGCTACACTCCCGCTTATTGCTGCAGAATATGCTCCAGCTGTAAAACCAAACTATAAATTAGACGACGAGGAAGGCACAGAGTGGGTAATCACTGATATTGTAAAGCATGAAGACACAGTTCAGACTAACTCCAATTCTAAAAAGTCTCTATTTAAAAGAGGCATGAGTCACCAACAAAACAACATGGAAGGATACGAATTCGTCTCCGACCCTTTTCCTAAATACTCACTCGTTTCTAAATTGATACGAACTAGGAGAcaacaacaaaagaaaaaaattatagaaaatcTACAATGGGACCGCGTTCGTATCAAAGGTCCTGGTAAAATGTGGCTTAAGGTGCCCAAAAAACAAAAAGCCTTGTTGGATACTACGGATAAAAACGCTGTGCTTCTACTTCGTCATACTACAGCAATCCCTTGTAGAATGGAGAACCTTAATTCGATAATTCCATGCTTTGCTTGCGATCAGAAATTTCAAGACCCTTTTCTATTCAGAGACCATTTCGTTGCAGAGCACCCATCGGCTGACAAGGTTATTGGCTTTTACAGTAAAATCATCAAGACACGGGTAGATATAACAGACCTAAGCTGCCTCTTATGTACGCAACCGCTTGATAGTTTAGATGAAGCGGCTGCACATCTTGTCAAGGAGCACCAAATAGAAATCAATCTAAAGGAGAAGCTTGGTCTGGTGCCGCTGAAATTCCCAGAAAGGGGATTGTGTCAATGCGCTGTCTGCGGTTTAAGAGTTGTTACGTTCAGAGAACTATACAGGCATTCTGGCTCACATTTCTCGCACCAGATCTGCGAGGTGTGTGGAATGCAATTTGAGACACCGAGTACTTTAAAATTGCATGCAGAAACAAAGCATATTAAGGGACGGTTATGCAAAAAGTGCAAAGTTGTATTCCCTTCCGACAAGGAGCTGAGTCTACACTTAAAAGAAGTACGCACTTGCAATCCAGGTTATTGCAAGATTTGCGATAAAGCCTTCGGATATTTCACACGACTACAAAGGCACAGAGAAGCAGAGCATGGCTTTGAAAAAAAGGTTTATCAATGCTCCGTGTGCCAAACAGTGTTCGAGAAACGAATGCAGCTGTATTTTCATTTCAAACAGAAGCATACCGATAGTTACAAGTGTAAAATATGCAACAAAAAAGTTTGTGGGCCTACAGGTGTGAAGCGACATATGAGAACTCACAGATAA
- Protein Sequence
- MYGKDEEWTSAEVKIEIPVEFENSVGASNEWITTDLADHATVVSKVTQECSNTVDDEWAILPLNAAEQPPTVKPNHYLDDDGTEWVINDTVMDTDTVQNSPDSNNTLTKTHQQNIKRYGFVSNLAPNVSRVGKPDSKLTRTVSHQQNNMEGYRFVSELAPKLNKPASKLTRNWRREIIKGYRFVSNPAPAISGVDQLKLKGYRLVSNPAPAVSGVDQLKWNRVRIQGAGEMWLKSSKKPRPLLDTSTLSKADQNAVLLVRNTTAIPYRIENVRSIIPCFACGHKFLDPFLFKDHFIAEHQSVDKANGLYSKNRIQTRVDITDLSCLLCTQSLDNLDEAAAHLVQMHKMGIDLNEKLGLVPLKFPERGLCQCTVCGTKFSAFRELYRHSGTHFANQICEVCGMQFETPYTLNLHVKTKHAKGRLCIKCKAIFPTGEELRQHVKEERSCSNGYCKICDKAFGYWQSLQKHREAVHGAEKRIYSCSVCQKVFEKRMQMYLHFKQKHTDSYKCKICNKKVCGSSDEEWTTTEVNIMIPAKLENSNNPSNEWITTDSADHANIDDSKVKQDYCKSVDDEWATLPLIAAEYAPAVKPNYKLDDEEGTEWVITDIVKHEDTVQTNSNSKKSLFKRGMSHQQNNMEGYEFVSDPFPKYSLVSKLIRTRRQQQKKKIIENLQWDRVRIKGPGKMWLKVPKKQKALLDTTDKNAVLLLRHTTAIPCRMENLNSIIPCFACDQKFQDPFLFRDHFVAEHPSADKVIGFYSKIIKTRVDITDLSCLLCTQPLDSLDEAAAHLVKEHQIEINLKEKLGLVPLKFPERGLCQCAVCGLRVVTFRELYRHSGSHFSHQICEVCGMQFETPSTLKLHAETKHIKGRLCKKCKVVFPSDKELSLHLKEVRTCNPGYCKICDKAFGYFTRLQRHREAEHGFEKKVYQCSVCQTVFEKRMQLYFHFKQKHTDSYKCKICNKKVCGPTGVKRHMRTHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -