Evul017279.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000091.1:3609364-3617841[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.069 5.1 8.4 2.8 1 23 658 681 658 681 0.95 2 17 6.3e-05 0.0047 18.0 0.9 1 23 690 713 690 713 0.96 3 17 0.11 8.3 7.8 0.5 2 23 726 748 726 748 0.96 4 17 0.00042 0.032 15.4 1.5 2 23 758 780 757 780 0.96 5 17 0.00022 0.017 16.3 1.7 2 23 793 815 792 815 0.96 6 17 1.2e-06 8.9e-05 23.4 0.5 1 23 843 866 843 866 0.97 7 17 4.9e-05 0.0037 18.3 1.2 2 23 876 898 875 898 0.96 8 17 0.35 26 6.2 1.5 2 19 903 920 902 922 0.92 9 17 0.0014 0.1 13.7 0.8 2 21 928 947 927 950 0.94 10 17 0.0029 0.21 12.8 0.4 3 23 960 981 959 981 0.97 11 17 5.9e-05 0.0044 18.1 2.9 1 23 986 1009 986 1009 0.95 12 17 0.015 1.1 10.5 5.0 1 23 1020 1043 1020 1043 0.93 13 17 7 5.2e+02 2.1 0.7 1 23 1065 1088 1065 1088 0.85 14 17 9.2 6.9e+02 1.7 1.2 12 23 1104 1115 1094 1115 0.74 15 17 0.47 35 5.8 1.5 2 23 1121 1142 1120 1142 0.97 16 17 0.0082 0.61 11.3 0.2 1 23 1208 1230 1208 1230 0.97 17 17 0.37 28 6.1 2.0 1 23 1236 1259 1236 1259 0.96
Sequence Information
- Coding Sequence
- atggaTCCTTCAGTGCCTCTCACTCCTGGTGGTCGACCCTTGATTTTGGCCAGGAACGTCGAGATCACTCCTAGTGGATCTGAACCAATCATGTCGCAGTCTCTACTaacagaaaaagaaataaaggcTGAAGATGATCGTAAAGATCCCACCTCTTTTCTTCCCAAAGAGGAAATGTGCTATGAGatcaaaaaaaagaagaaaaagaaaaaaaagaagaaacaaGAGGATCCATTCAAAGATCTTGAAGGACCATTGACCATTCTTCGGGAACCAGATATAACTGCTTTGGATCCTGATATTGGGAGCCTGGATCCAGAGGTTACGATCAAGGTTGAGGATATTGAAGTGGCTCTTAATATTGATGATTTGTGGCAGCTTCACGGTAAACCTAGAGCAGGGCAAGTTTACAATGAGATGTTGGAGTCGAGAAGAGTTTTTAAGTCTAAGTTGAAATGGTGCCAGAAAAACCAGGAACAACTGAAAATGGATATTATTTCGCAACATCATTCCAGCAAGGATTTTAAACTCTTCTGGAAAACGACAAACAGACTTAGTCCGAAGCCGAGTCTTCCCGTGAGCGTCGCTGGGGTGCACGATCCTGCTGGCATAGCGAGGGCCTTTCAGGCGCATTTTAGAGTTGACTCGCCCCTCGGACCGTCGTCGTCAGCTGCGGTGCTCGATGATGAGTGTCGTACTGATAACCTGATGCTAAGATTTTCTGTAGAGGACGTTAAAAGCGTAATTAAAAACATGGTACGTGGTAAATCTCCGGGTTACGACTATCTCAGCATCGAACACCTGCAGTGCGCAGGCGGTCATCTACCTAGGGTACTATCAATACTGTTTAATCTTTGTCTGAGTCATTCGTACCTACCTGATAACCTGATGCATACCACGGTGGTGCCTATTGTGAAAAACAAAACGGGTGATGTTTCGGACCTGTCCAATTATAGGCCTATTTCGCTGGCTACTATCGTGGCTAAGGTGCTGGATAGTTTGCTTGATCGATACCTACGGGGGCACATTAAACTGAACGATGCTCAATTTGGGTTTCGGCCAGGTTTATCAACAGAAAGTGCTATCTTTTCTCTCAAGCAAACTGTTCAGTACTACACGGCTAGAGGAACGCCGGTGTACGCTTGTTATTTGGACCTGTCCAAGGCATTCGACCTGGTTTCATATGACTTGCTTTGGAAGAAACTGGCGCTTGAGTCGGCCTTCCCAGGAGAGTTAGCGTCACTATTTCGTTATTGGTATAGTCACCAAACTAATATTGTGAAGTGGGCGGACTCATACTCGGACATGTACAGGCTGGAATGCGGGGTGAGGCAGGGGGGGGTCTCTTCTCCAAGTCTTTTCAACCTGTACATGAACAGCTTGATTAAGGAGCTCAGTAGCACCAAAGTCGGCTGTCACATAGATGGGATCTGTATCAATAACATTAGCTACGCCGACGATATGGTGTTGCTGAGCCCCTCGATAGGAGCTCTACGTAAGCTGCTGCAGACATGTGAGTCTTATGCGAAGGCCCATGGGCTCAGATATAACGCAAAAAAGAGTgagtttatgttatttagggCAGGCTCTAAGACCTACCTGAATATACCACCCATCGCCCTAGACGGAACTCCTCTTAAGcgcgtatcaaaatttaaatatctgGGCCACTGGGTAAACGAGGACCTAGAGGATAATGAAGACATAGAGAGAGAGCGCAGGGCGTTGGCCGTCCGATGTAACATGGTGGCACGCAGGTTTGCACGCAGTTCCAGGGAGTTCGACAACGACGACGGCCTCGTAGAAGAAGGTTACCCGGAAGACGCCCAACTAGAACCAGTCGTCAAACTCGAAGACCAGAACAAAGATCACGTTCTGCTCACCTTCCAAAACATCATCAGCGACAACCTTATCTCTGACAAACTCTTAAAAATCGAAAAGATGTCACCACCTCATGATGCTGGAGAGAACCACTTCTGCCAAGTCTGTCATCTTGCCTTCGGATCTGCTAAAACACTTGATGCCCATAGGAAACGTTCACATAAGAAATTCAGGCAGTCATTTGCACACATATGTAATGACTGCGGTATGTCATACGAGTATAAGAATAGTTTAGTCGCTCATATTAGAAGAAAACACGGGCCCGATGCTAATAGAGATGATATGGTCGAACGATCCTGCGAAGTCTGTGCTTTAGTTTTTAAAGGGATTAACAGGCTGAGAATGCATATGAGAAGAAAACATGGCTCTCACGAGGACGCATTTAATATAGTTTGCAAGTATTGCGGATTGTCGTACGATAAGCAATGTAGTCTTTTAGTTCATATAAGAAGAAAACATACACATAAGTCTAAACCAAAAGCGAATTTGTGGCTGACTTGCCCTTTCTGCAcgaaaacttttaataaaagaGAAACTTACGCGAGACATATACAAAGGAATCATAAAGTAAGAGAAGAAGGTGATGAGGGACAGTTAGAAgaagataaatttaaaaaggaTTATCTGAATGAGAGAACAGGTGAATACGCTTGTAAAGAATGCCCGGCTAGCTTTTCAACTGCTAGCTATTTGAAATGGCATATGAAAAGGAAGCATAATGCTGAAATCGCGGACTTTAGACTCAAGTGTAAGATCTGTAGTCTTTCCTACGCAAATTCGGAAAGTTTGAAGCGTCATGTAAGAAGAAAACATGACAAAGATACCTATTGTTATGATTGTAATAGAAAATTCCCTGACAAACAAACTTATTTAGACCATTCTCATGCTAAAGATGTTAAGGAATGCACGATATGTGGGTTGATTTTCGCGAATCAAGGCGGGTTGTCTAAACATCTACGATGTACGCACAAGCTGGACAGTCCATTGACTGTGTTCTGTCCTATATGTAACCAAGGTTTCTACAGCAAAAGACAGTTAAAACCACATATCAACCGCGTCCATCTAAAAGTGACGTACACTTGCAAATATTGCAATAAAGTTTTCAAAACTAGAGATGTGTACAAAAGGCATGTGACCATCAAACATTTACAAATTCCACCGGAAGATATGGAAACACACCAGTGTGATAAATGTCAAGAAAAGTTCAAAGATGAATTCGATTTATGCAAGCATAACAATCTTGTACACGGTGAGGATTCCAGCATAGCTGTTGTTATTAAAAAGGAGGAATTGGATGATATTAAAAACGTCTTCAAGTGCACGAAATGTACAGATGAATATCTAAGCTGGGATTTGCTACGCGTACACTTCGAGCAAACGCACCATATGACTGAAGAAGTGCAGTGCCAAATATGCGGGGACTTAATGAGTCGAGGGGATTTAATTAAACACATCAAAGTTCATGATGAAATTGAAGTACAATGCCAATACTGTGAGTTCAAAAGCAAAAACCGGCTTAGCATGACTCAACATGTCTTAAGGCACACCCATGCTCAAACCTTACACTGTGACTATCCAAACTGTAGATACAAATCATTCTATGAACATGCTATGGTCAAGCATAAGAAACGTCATCAAGAACTAGGTGTTAAATTACAATGTACGAGCTGCCCGTTCCAAACTATGAACAAATACATCTTGAAGTACCACGAAGAAGCTCATGAGACGGGGAAAAAGCGTTACCAATGTGATAAATGTGATTATGCCACAATACTGCCAGCGAATCTAGtgcaacataaatataaacattccACGGAGAAGAAGTTTAAGTGTGAAGTGTGTCCGTTCGCAACTAAGTATAATACCTCTCTGCGATTTCATGTAAAGAAGAAACATTGTGATCTACCGACTTTGAGTTAG
- Protein Sequence
- MDPSVPLTPGGRPLILARNVEITPSGSEPIMSQSLLTEKEIKAEDDRKDPTSFLPKEEMCYEIKKKKKKKKKKKQEDPFKDLEGPLTILREPDITALDPDIGSLDPEVTIKVEDIEVALNIDDLWQLHGKPRAGQVYNEMLESRRVFKSKLKWCQKNQEQLKMDIISQHHSSKDFKLFWKTTNRLSPKPSLPVSVAGVHDPAGIARAFQAHFRVDSPLGPSSSAAVLDDECRTDNLMLRFSVEDVKSVIKNMVRGKSPGYDYLSIEHLQCAGGHLPRVLSILFNLCLSHSYLPDNLMHTTVVPIVKNKTGDVSDLSNYRPISLATIVAKVLDSLLDRYLRGHIKLNDAQFGFRPGLSTESAIFSLKQTVQYYTARGTPVYACYLDLSKAFDLVSYDLLWKKLALESAFPGELASLFRYWYSHQTNIVKWADSYSDMYRLECGVRQGGVSSPSLFNLYMNSLIKELSSTKVGCHIDGICINNISYADDMVLLSPSIGALRKLLQTCESYAKAHGLRYNAKKSEFMLFRAGSKTYLNIPPIALDGTPLKRVSKFKYLGHWVNEDLEDNEDIERERRALAVRCNMVARRFARSSREFDNDDGLVEEGYPEDAQLEPVVKLEDQNKDHVLLTFQNIISDNLISDKLLKIEKMSPPHDAGENHFCQVCHLAFGSAKTLDAHRKRSHKKFRQSFAHICNDCGMSYEYKNSLVAHIRRKHGPDANRDDMVERSCEVCALVFKGINRLRMHMRRKHGSHEDAFNIVCKYCGLSYDKQCSLLVHIRRKHTHKSKPKANLWLTCPFCTKTFNKRETYARHIQRNHKVREEGDEGQLEEDKFKKDYLNERTGEYACKECPASFSTASYLKWHMKRKHNAEIADFRLKCKICSLSYANSESLKRHVRRKHDKDTYCYDCNRKFPDKQTYLDHSHAKDVKECTICGLIFANQGGLSKHLRCTHKLDSPLTVFCPICNQGFYSKRQLKPHINRVHLKVTYTCKYCNKVFKTRDVYKRHVTIKHLQIPPEDMETHQCDKCQEKFKDEFDLCKHNNLVHGEDSSIAVVIKKEELDDIKNVFKCTKCTDEYLSWDLLRVHFEQTHHMTEEVQCQICGDLMSRGDLIKHIKVHDEIEVQCQYCEFKSKNRLSMTQHVLRHTHAQTLHCDYPNCRYKSFYEHAMVKHKKRHQELGVKLQCTSCPFQTMNKYILKYHEEAHETGKKRYQCDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPTLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -