Evul015328.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000075.1:3006913-3010535[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00018 0.013 16.6 0.1 1 23 7 29 7 29 0.97 2 22 0.00089 0.067 14.3 6.7 1 23 40 62 40 62 0.97 3 22 0.076 5.6 8.3 0.6 2 23 74 95 73 95 0.96 4 22 0.002 0.15 13.2 1.0 1 23 105 127 105 127 0.98 5 22 0.33 25 6.2 4.2 1 23 156 178 156 178 0.92 6 22 0.00072 0.054 14.6 5.6 1 23 189 211 189 211 0.98 7 22 0.0011 0.082 14.1 1.2 1 23 219 241 219 241 0.96 8 22 2.9e-05 0.0022 19.0 0.5 2 23 261 283 260 283 0.97 9 22 0.0065 0.48 11.6 2.6 1 23 301 323 301 323 0.98 10 22 0.12 8.9 7.7 0.6 2 23 364 386 363 386 0.90 11 22 0.002 0.15 13.3 0.2 2 23 409 430 408 430 0.95 12 22 0.22 16 6.8 0.3 2 20 434 452 433 453 0.92 13 22 0.32 24 6.3 1.0 2 23 473 495 472 495 0.93 14 22 0.024 1.8 9.8 0.6 2 23 511 532 510 532 0.91 15 22 0.27 20 6.5 4.6 5 23 542 560 540 560 0.94 16 22 0.00019 0.014 16.5 1.9 1 23 570 593 570 593 0.96 17 22 1.3 1e+02 4.3 2.9 2 23 610 628 610 628 0.78 18 22 1.2 86 4.6 2.7 2 21 632 651 631 652 0.93 19 22 0.11 8.2 7.8 2.2 2 23 700 721 699 721 0.94 20 22 0.0062 0.46 11.7 0.5 2 23 732 754 731 754 0.96 21 22 6.6 4.9e+02 2.2 0.6 2 23 770 788 770 788 0.72 22 22 0.34 26 6.2 3.3 2 20 792 810 791 812 0.93
Sequence Information
- Coding Sequence
- ATGGTTAACCTGACCGGGTTCACTTGTCCTATTTGTGGCAAGAAGATGCCGACGCTCGTGTCCCTCAAACGCCACGTCAACTGGCACTCCTTCGTGGGGAACAATCTGGAGTCGAAGCATGAATGTTTCGTGTGTAAAGAGacattcAAGTTCAAAGGTCACTTCAAGATCCACATGCGTCAACACTACAAGGATCCCAATATCGACGCGTCCTTCCTCACGTGCGCCATCTGCCAGCGCCGCAGCAAGCACCTCCGCGCGGCGCAGGCGCACATGAACTGGCACAAGCAGACCCGCTTCCAGACCAAGGACTACCAGTGCTCTATTTGCAAGCGAGTCTTCCAGTACAGGAAGGTGTATCTCTCTCACATGGCGGTCCATTACAAGAAGGGCGAGAGCGGACAGAACACGGTCGTCGGCGATATGGTCCCAAACAACCTCGATAAAGCCAAGTATGACGGCACCTTCACCTGCCAGCTCTGCGGGAAGGTCTGCGACTCTGAAAACTCCTTAAAATGTCACACCAGCTGGCACAGGTCCAAGACGCTGCTGTACGGAGCGCGCCACGAGTGCCAAATGTGCAATCTCCAGTTCACGAACAAGCGTCATTTAGAGCTCCACACGCGCTCCCATTACGAGGACCCCAACGGTGAGTTCAAGTGCAATATATGCGGTAAGGGCTTCATAGACGAGGAGTACCACAGGAGACACGTCAAGGGGCACAACTTTGATCACCAATCTCATAAGAAGCGAATTGAGAAGCTGAGGAAAGGTAAGGTGAAGTGTCCGATCTGCGACCGGTACTATCCTGATCTTGTGCACCTGATCCGCCACCTGCGCCGCACGCACCCCGAGAGCAAGATGATCAAGGAGGACCCCGACGCGCCGCCGCCCAAGTATTATAGCTGCAAGCTTTGCGCCAAGTCCTTCTACGATGAGAAACGGTTCAAGAGTCACCAGGAGTCGCATCTCCGCAAGCCCTGCTTCATCAAATGCAAGTTCTGCGGATACAAAAGTATATCCATGAAGAATCATCACTTACACATCAAACAGAAGCATATGACAAAGAAGTACGTAGAGAATCCGCTGAAGTGTCCGCGGTGTGACGAAGTCTTCGTGTGGGGCTATGCGTTGCATCACCATTTGCGCGACGAGCACGGTGTTCAGGAGGACTGGGTGGCGGAGCGCGACGACGCGGCGCTTGAAGGACCACTGAAAGACCTGCAGTGCTCCATTTGCCTGAAGGTCCTCGCCAGCAAGGGCAACTTTGAGCGACATCTCGATTACCACAACACTTTACGCTGCAACTACTGCTTCGAGTACTTCAGCACGCTGCGCTTCCTCGAGGGACACCTTGCCTTTACCTGCGACAAGAGAAACCTAGTCGGCGATACTGATCCCTATCCTAAACGCGTCAAGTGCGAGATTTGCTACAAGGCTTTCGCACTACAAGTGAAGCTGGACTGTCACCTGCGGAGCCAGCATGACATCAAGGTGCAGCGCGACCAGCATGCCGGCAGGCAGGAGCTCGTCTGTGACTACTGCTTCAAGGTGTTCGAGAACGAGCACGCGCTCAGCGGGCACAAGGTCTACCACCGCACCATCGGCTACTTCGGTTGCATCTACTGCGAGCGCAAGTTCAACACCCAGACCGCCTTCCGCAAGCACAAAAACCACCACTTCACTGTGCACAACGTCGAGGAACCCTTCAAATGCGAGCACTGCGACGAGACTTTTGTCCAGTTCCGAGAGATGATCTACCACATGCGCGACGACCACGGCGACGACAAGGAATGGATCGTGATGCCCAAGGAGTCTATAGAAGAAACCTGCTCCATCTGCAATAAGACCTTTTTCAACATCCACCGGCACATGGACTACCACGAGGAGAACAAGTGCAAAAAGTGCCACGAGTACTTCTACTCCACCGCGGATTATGACAACCACCTGTGCGCGATAGAGAGCGATGCGGAGGAGGCGCCGGGCGTCCCGCGCTCCGACGTCCCCTACCAGGAATGCACCTTCTGCTTCAAGCCGATTACCAAGAAGGACTCCAAGAAGAAACACGACATGCTTCACCGCACTTCGGGAGCGATCTCCTGCAGATTCTGCCATCTCAAGTTCAAGACACTCGACGCTTTCAACATCCATGCGTTTTCGCACCGCAGCCGCAAATATACCAAGAAGCCGCTGAAATGTCGCGTCTGCAAGGAGCGCTTCATCAAGTATGGGCCGTTTATAAAACACATGAAGGTGGTTCACAAATGCGTTAAGAAGAGCCACTACCGCGCGCTGGTCAAGCCTGAACGCTGCGTCATCTGCGGAGAGTCTCTACCCAATCTGCACAACCACTACCGCGCTCATCTTGCCAACCAGTGCCAGTTCTGCAACAAATACTTCACCTCCTCACGCGTCTTCGCGAGACACAAGTGCGATGTCATCGACGAAGACGCTACCAAAGTCTTCACCTCCGATGAAAACATCCACGCGCTGATCAACTCCTACATCCCTAAAGACTTGAAAGACGATGAGAAGTTCTACGGCTATACAGACGATGAAGAGGAGGTCGAAGCTGAAATTCCTCCGGCGATCACCGTAGAGCAGGATAATAAGGTTAAGAAGGCGATGAACGGGCCGACAAAACGCAAACCGAAGCCGAAGCGGCTGACCCAGGAGGCCGAGTATGAGAGGGATCTCCACATGATGGTGCAGTCCCCCATTATATCGGACGTTCTGTCACTATACCAGAACGACGACGCTACTCAAGACGGTACAGGCGGCGCAAGAACGCAAACGTTTCTGGGAGAGATTGTTTCCCTCACTGACGATGATTCTATGGATGTGAATGATATTGCACCTCCCATTGTCGTTATAGACGATGATTAG
- Protein Sequence
- MVNLTGFTCPICGKKMPTLVSLKRHVNWHSFVGNNLESKHECFVCKETFKFKGHFKIHMRQHYKDPNIDASFLTCAICQRRSKHLRAAQAHMNWHKQTRFQTKDYQCSICKRVFQYRKVYLSHMAVHYKKGESGQNTVVGDMVPNNLDKAKYDGTFTCQLCGKVCDSENSLKCHTSWHRSKTLLYGARHECQMCNLQFTNKRHLELHTRSHYEDPNGEFKCNICGKGFIDEEYHRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICDRYYPDLVHLIRHLRRTHPESKMIKEDPDAPPPKYYSCKLCAKSFYDEKRFKSHQESHLRKPCFIKCKFCGYKSISMKNHHLHIKQKHMTKKYVENPLKCPRCDEVFVWGYALHHHLRDEHGVQEDWVAERDDAALEGPLKDLQCSICLKVLASKGNFERHLDYHNTLRCNYCFEYFSTLRFLEGHLAFTCDKRNLVGDTDPYPKRVKCEICYKAFALQVKLDCHLRSQHDIKVQRDQHAGRQELVCDYCFKVFENEHALSGHKVYHRTIGYFGCIYCERKFNTQTAFRKHKNHHFTVHNVEEPFKCEHCDETFVQFREMIYHMRDDHGDDKEWIVMPKESIEETCSICNKTFFNIHRHMDYHEENKCKKCHEYFYSTADYDNHLCAIESDAEEAPGVPRSDVPYQECTFCFKPITKKDSKKKHDMLHRTSGAISCRFCHLKFKTLDAFNIHAFSHRSRKYTKKPLKCRVCKERFIKYGPFIKHMKVVHKCVKKSHYRALVKPERCVICGESLPNLHNHYRAHLANQCQFCNKYFTSSRVFARHKCDVIDEDATKVFTSDENIHALINSYIPKDLKDDEKFYGYTDDEEEVEAEIPPAITVEQDNKVKKAMNGPTKRKPKPKRLTQEAEYERDLHMMVQSPIISDVLSLYQNDDATQDGTGGARTQTFLGEIVSLTDDDSMDVNDIAPPIVVIDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -