Evul024975.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000189.1:210041-219683[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.17 13 7.2 0.2 3 23 66 87 64 87 0.91 2 21 1.4 1e+02 4.3 5.4 1 23 254 277 254 277 0.94 3 21 3.8 2.8e+02 2.9 0.0 3 23 305 328 303 328 0.82 4 21 3.3 2.4e+02 3.1 4.0 1 23 350 372 350 372 0.97 5 21 1.1 81 4.6 0.3 1 23 376 399 376 399 0.88 6 21 0.00097 0.072 14.2 1.5 1 23 405 427 405 427 0.98 7 21 0.039 2.9 9.2 3.8 1 23 433 456 433 456 0.96 8 21 0.005 0.37 12.0 0.2 2 23 464 486 463 486 0.96 9 21 0.00018 0.013 16.6 2.9 1 23 492 514 492 514 0.97 10 21 5.9e-07 4.4e-05 24.4 0.5 2 23 521 542 520 542 0.97 11 21 0.15 11 7.4 2.4 1 22 548 569 548 569 0.96 12 21 0.027 2 9.7 1.7 1 23 750 773 750 773 0.94 13 21 0.1 7.5 7.9 0.0 3 23 803 824 801 824 0.95 14 21 0.089 6.6 8.1 0.5 2 23 847 868 846 868 0.96 15 21 0.0026 0.19 12.9 0.1 1 23 872 894 872 894 0.95 16 21 0.053 4 8.8 2.9 1 23 899 922 899 922 0.96 17 21 0.26 20 6.6 6.1 3 23 1037 1057 1035 1057 0.96 18 21 0.97 72 4.8 0.1 2 23 1084 1106 1083 1106 0.94 19 21 0.0035 0.26 12.5 1.9 2 23 1130 1151 1129 1151 0.97 20 21 0.0025 0.19 12.9 0.2 1 22 1155 1176 1155 1178 0.89 21 21 0.44 33 5.9 1.3 1 14 1183 1196 1183 1206 0.88
Sequence Information
- Coding Sequence
- ATGGAATGGGATCACGTTTTGCCAAGACGAAAGACGATTAAAAGACATTTAGATGATCAAGAAGATGTGACAAGCAATCCGAAATTCAGGAAACCTGATCCAGAAGAAATGGCAATGCAGAAACACAATGTTAAACAGATATTTCTGTATTCGAATGCAACACCACTATTGCGACATACAGATTTAGGCTACGGGTGTGCTTTTTGCCCCGAATACTATCAAAAACCTTCCGATCTTAAGAAACATACACTTGATAACCACGATATAAACACTAGAGCTACTTATATGAGTAAACCACGCTTTGGATCAGGAAGCTACGTGGTCAAACTCGACGTAACAAACCTAAAATGTACTATATGCGAACAAGATATCGATTACGTAGATGTTAAGGAACATCTTGCTGAACATGGAAAATTTATGCACGATCTTACAAAGAACTACACAGTACCGTTTAAGTTTGATGATGATATCCTTAAGTgtATCCTCACAGACTACAAACCCATAAAACTGGAAGTTGAATGGGATTTAGAGACAAGCTTGGAAATTTCAAGTATTAAAGAGGAGAGCTCATCTTCCgatgataaaaagaaaagaggTAAACGCGGGAAGAAGAAAAAAGTTGATGACTTCCGACCGCTTAAGATTAAACCACCCGCAAAAGTCGAGGTTTTAGATGTGGAAAAACATAGATACAATGTTCGAGCGTTATTACAATACTCCAATGCGACGCCGATCAGAGCGCACTACGCAGGGAACGGATACGCTTGCTGCTTCTGCAAACAGTACTTCCACAAGGCATCAGAACTCAAGGAGCACACACTACAATCTCACGACGAATCAACCAAAAAGAAATATATGCAGAAGGCATTCCTGTTCAAGCTGTTTGTCAAACTTGATATAACACTACTACGTTGTACAGTTTGCGCAGCTGACATTATATTTGATACTCTCGAACAACTCATAGAACATTTGAATTCGACACATCAAAAAGGAATACATACGGATATTAAGAATCAAATAATGTGTTTTAAGCTAGATGAGGAAGTTTTTCGATGTTTTATCTGTTCAGTTGAATATCACAGCTTTAAGAATTTACTTGAACATGCACATTCGCATTATAGAAACTTTATATGCGAGACATGCGACGCGGGCTTTATTAACAGACTTAAACTATACGGACACGTCTACAATAAGCATAAAGGCGCAGGTGCGCATAAATGCAACACTTGCGCGAAAATTTTCGATACtcccataaaattaaaaacccaCGAAAGGATACATTTAGGAACAGTACTCTACAAATGCCATGAATGCAATGACAAGTTTACGAAAAAGAAAGAGAAGAGAGATCACATGATAAATGTACACGGAGCTAAATTTTCCAGGATCAAATGCACAGCGTGCGACAAGCTGTTTATTAGTAAAGCCTCGCTAAGCGTTCACGTTAATCGAGACCACTTGATGGATAGGAGACACCAGTGTGAACTTTGCGAAAAGACCTTCTTCACGTCATCGTTTTTGAGAGATCACATGGTATCTCACTCTAGGGTTAGAGAGATTCAATGCGACGAATGCCCCAAAACGTTTGCGAGGAAAAAAGCGTTACGTGAGCATATGAAATCTCATACTGGTGATCGTAGGTTCAAGTGTACGTTCTGCGATATGGCTTTTCTTCAGAAGTGTAGCTTGAAAGGTCACTTGAGAAGTATCATCGTCAGAGACCACAAAGCAATCAAATCGGAGGTAGGAAACTCTTGGGGCGTTACTATTGTTAAAGTAAAAGGGCCTAATACTGAATATCCCGTAATTAATGATACTAATGAAAAAACTAatacaaaatctaaaaaaaagaaTCTGAAATCAGAAGAAATTAAAGTGAAATCAAAGAAATGTAACATCGAGCAAGTATCTATTATTCAGAAACGTTTTAATGTAATGGCTGATAACAAACCTAATAAATCCAAAGAAACACCTTCTGCTGctttaaatatcaaaattaaCCCTCCACccgatataataataaaacaagttaaTCCTAAAACCGCCGAAACTAAACCCAAAGAGGCCAAACTAAAACCTGAAAAGAAGAAAGAACCCCTAACAATCGACGCACCCATTCaaagaatgaaaataattcCTCCACCAGACATGGATTTTATGATGGAGCTAGACAAGCACAGATTTAACATACGTACCGTGATgcaatactcaaacgcaacccCAATAAGAAACCACGTTAAAAGCGGTTTCGTTTGTTGCTTCTGCGATGCACACTTCCCCAAACCAGGAGACCTAAAAATCCATACAATCCAAACCCACATAGACGATGAGAGCAAAGAAAAGTTCTTCCGTAAGAAAGCAGTCTTATACTCATTCATGGTAAAACTTGATATAACACATCTAGCTTGCAATATCTGCCAAATTGCTATCGAGACGCTCGAGCAACTTATTTCCCATCTCAACAGTATCCACCAGAAAAACTTACACACAGATATAAAAAACCACATCGTCTGCTTCAAATTCGACAGCGATGTAATGAGATGTCTCGTTTGTGCCCAAGAATTCAATAGCTTCAAACTGCTTTCTGAACACATGAACCAGCACTACACTAACTTCGTTTGTGATGAATGCGGTGCTGGATTTATTAACAGAAGGCAGTTGCTCCTTCACTCTGATAAACATAAAGTTGGGGAACACAAATGTGGATCTTGCGATAAAGTCTTTCAATCATTGAAAAGAATGAAGACCCACGAACGCGTTACGCACTTGTATAATTCTGgtAAGAACGCGAGTGACGTCAAACCCACTAAACAAGAACTACCGTCTAGTTCTTGGCAAGTTACTATTGTTAAAGTCGGTGGTAATGCCGACGAATCACCAACCGTTAAAAAACAACCCAagacaataatacaaaaacccgATGAAACAACCATCAACGGAATGAAATTTGGAGACATGAAGAAACCCATATCTTTTGTTAAGAAAGCTAAACCAGTACAAGTGCAAGAAACTTCTGAACTTGACAAACAGAGATTTAACATTCGGACTATATTACAGTTTTCTAATGCAACGCCAATACGAACGCATTCTATATCAACTGGATACGGCTGCTGTTTTTGCAATAAATACTTCCATAAGGCTTCCGACCTCAAAAGTCATACTAATAATCATGACAAAGAAGCCAAATCAAAATTCATGAAAGGAGCTACATTATTTACGTTCCTTGTGAAATTAGACGTAACTGGATTATCCTGCAACATTTGCAAATTATCAATGGATAACATAGAAGAACTGATGGAAcatcttaataatacacacgaTAAAAGACTGTatacagaattaaaaaaatatgtagtatgCTTTAAACTTGCCACCGATGATATCATGAAATGTCATGTATGTGACGCGGAATTTAAGAGCTTCAGGGTGTTACAGGAACATATGAAAAATCATTCCACAAATTTCATTTGTGACGAGTGTGGAGTTGGATTTATAAATCTGGGACAGCTGCGGCACCATTCTGATAACGTACACATGATATCCGAGTACAAGTGCGATAAATGTAACCAAATCTTTCCGACGTCGAAAAAGAAGTATTTTCATGAGCGCGCTGCGCATTCTGAGTTTAAGAGAAGGTATGCTGATTGA
- Protein Sequence
- MEWDHVLPRRKTIKRHLDDQEDVTSNPKFRKPDPEEMAMQKHNVKQIFLYSNATPLLRHTDLGYGCAFCPEYYQKPSDLKKHTLDNHDINTRATYMSKPRFGSGSYVVKLDVTNLKCTICEQDIDYVDVKEHLAEHGKFMHDLTKNYTVPFKFDDDILKCILTDYKPIKLEVEWDLETSLEISSIKEESSSSDDKKKRGKRGKKKKVDDFRPLKIKPPAKVEVLDVEKHRYNVRALLQYSNATPIRAHYAGNGYACCFCKQYFHKASELKEHTLQSHDESTKKKYMQKAFLFKLFVKLDITLLRCTVCAADIIFDTLEQLIEHLNSTHQKGIHTDIKNQIMCFKLDEEVFRCFICSVEYHSFKNLLEHAHSHYRNFICETCDAGFINRLKLYGHVYNKHKGAGAHKCNTCAKIFDTPIKLKTHERIHLGTVLYKCHECNDKFTKKKEKRDHMINVHGAKFSRIKCTACDKLFISKASLSVHVNRDHLMDRRHQCELCEKTFFTSSFLRDHMVSHSRVREIQCDECPKTFARKKALREHMKSHTGDRRFKCTFCDMAFLQKCSLKGHLRSIIVRDHKAIKSEVGNSWGVTIVKVKGPNTEYPVINDTNEKTNTKSKKKNLKSEEIKVKSKKCNIEQVSIIQKRFNVMADNKPNKSKETPSAALNIKINPPPDIIIKQVNPKTAETKPKEAKLKPEKKKEPLTIDAPIQRMKIIPPPDMDFMMELDKHRFNIRTVMQYSNATPIRNHVKSGFVCCFCDAHFPKPGDLKIHTIQTHIDDESKEKFFRKKAVLYSFMVKLDITHLACNICQIAIETLEQLISHLNSIHQKNLHTDIKNHIVCFKFDSDVMRCLVCAQEFNSFKLLSEHMNQHYTNFVCDECGAGFINRRQLLLHSDKHKVGEHKCGSCDKVFQSLKRMKTHERVTHLYNSGKNASDVKPTKQELPSSSWQVTIVKVGGNADESPTVKKQPKTIIQKPDETTINGMKFGDMKKPISFVKKAKPVQVQETSELDKQRFNIRTILQFSNATPIRTHSISTGYGCCFCNKYFHKASDLKSHTNNHDKEAKSKFMKGATLFTFLVKLDVTGLSCNICKLSMDNIEELMEHLNNTHDKRLYTELKKYVVCFKLATDDIMKCHVCDAEFKSFRVLQEHMKNHSTNFICDECGVGFINLGQLRHHSDNVHMISEYKCDKCNQIFPTSKKKYFHERAAHSEFKRRYAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -