Evul021251.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000125.1:1389930-1392634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.83 62 5.0 2.4 1 23 25 46 25 46 0.96 2 17 0.23 17 6.7 0.2 3 23 123 144 121 144 0.93 3 17 1.9e-05 0.0014 19.6 0.3 1 23 149 172 149 172 0.95 4 17 0.045 3.4 9.0 5.2 1 23 175 198 175 198 0.94 5 17 0.00053 0.039 15.1 0.6 1 23 204 227 204 227 0.94 6 17 0.015 1.1 10.5 0.6 2 23 235 257 234 257 0.95 7 17 0.035 2.6 9.3 0.6 1 23 262 284 262 284 0.98 8 17 1.4e-08 1e-06 29.5 0.7 1 23 290 312 290 312 0.99 9 17 0.13 9.3 7.6 0.6 1 23 386 408 386 408 0.96 10 17 0.47 35 5.8 0.1 2 23 434 456 433 456 0.93 11 17 0.36 27 6.2 0.1 3 23 480 501 478 501 0.93 12 17 0.00079 0.059 14.5 0.2 3 23 509 530 508 530 0.97 13 17 0.00097 0.072 14.2 0.6 3 23 537 558 536 558 0.95 14 17 0.0068 0.51 11.6 2.3 1 23 564 587 564 587 0.98 15 17 0.00051 0.038 15.1 2.5 2 23 594 616 593 616 0.95 16 17 0.016 1.2 10.4 1.3 1 23 622 644 622 644 0.94 17 17 0.01 0.75 11.0 1.2 1 23 650 673 650 673 0.89
Sequence Information
- Coding Sequence
- ATGCTCAGACGCAACATTTTCACCGTCCTCCGCTACTCCAACGTTACGCCATTCAATTGGAACACAAAAGGCTTCCGTTGCTTCTACTGCTCAAAGCAGTTGCGAGAATCCAATATAAAAGAACACACAGACAAACATAATGCTGTAGACTTGGATGGTTTCCTCAAAAAGAATGTCATTACCAAAGATATACCAGTCAAAATTGATATAACAAATCTAGCTTGCAATTTCTGCCCTGGAACCCCCATCGCGTCTTTAGATGAAATGATATTGCATATAGTTGAAGACCATAACGAATTTTATGATACAGATACTGAATTATGTTTCTTCCCTTTTATTCTCAAGAAAGataacaatataattaattGCGTGTTATGTGAGACGGAGTTTGACAACTTTCCGTCACTTATAACGCATTTGTACAAGCAGCATATAACACACTCGTTTATATGCCAAGTATGTGGCCTCAGCTTCAAAGACCAGGTCCGCTTGAAGAGGCATATCACTGTTAGTCATATCGGACACCGCTGCAAAGTCTGCGACAAAGTCTTCGACGCATACCACAAATTAGATAAACATAAAGAGAAATTCCACGGTCATGTTAAAACTTACGACTGTAATCTATGCACTGGTAGCTTCAAAAGCAACTATCAACTCAGAGTCCATCTAGGGAAGGTTCACAACGTTCAGAAGTATAGGATTCAGTGTGAACAATGCAGTAAGATTTGTACTACTAAAGGCGCTATGGTCTTGCATGTCCAAAGTCTGCATTCAGAAATCAGATACCAGTGTGATGAGTGTGATTATACGACAGGAATTAAATGGCTGGTTAAGCTCCATAAGCGTAAGCACACAGCGGTCAAGGATTATACTTGTAGTATTTGTGAGAGAGCGTTTCGTCGGTCGAGCAATCTCAGAGCTCATATGAAAGTCCACGCGGGAGAACCTAGAGGTGGCCAGAAAGCAAAGCCATTGATAAAACCGACGCCAGCACCGCCCAAACGACCCGTCAAAAGTCTTGCACCGTCCTCCAGCGTACTCGCAACTAAACCCAAAGGTTTATCCAGTAAGGAAAAACGGAACATAATGATCCAAAACGTACTAGCGATTCTTCTTAAGACAACGGCTATGCCTTTCCGCTGGTTAAAAAGTTCTTACCGTTGCTTTTATTGCTACGATATCTTTCAAGAGGCGTCGGACTTAAAAGAGCATCAAACAGCACACAGTGATGTTTCTATTAAGGAAAAGGCAATGAACAACTATTGGGAACCTGTAGTGTACATCGATATATCCAACATGAAATGTCTTCTATGCCCCGAAGAAGTAACAGATTTATACGATATGATCAATCACTTAGTCTCCAAACACAACGTTGTTTATAACAAAGATGTAGGAACTTGTATGGTCGCTTTCAAGCTGAACAATTTCGACGTTAGTTGCCTCGCTTGCGGTGCTAGCTTCTACTCCTTCGGTCCGTTATTGAACCATACGAATAAAGACCACAAAGGTGCATCGGTCATCCTCTGCGACGTATGCGGTCAGAACTATAAAGACCAGAATCTTTTGCGGCTCCACGTAAAATCCGCGCATGACAACAGTGGCATGCTATGCCCTGAATGCGGTGACAAATTTGAGACGCGATCGAAGTTAAAAACACACCAAATCAACAGCCACGGTGTCGAGCGTAAATTCAAATGCCTGGTCTGTGATCTTACCTTTGGCAGCCATTACAAAAGATCTCGCCACATGGCGACCGATCACAAAAACCGACAAGAGATCAAATGTCTACACTGCCCGAAGACCTTCGTCTTCCGGAGTATGATGACGACACATCTAAGAGACACACATTTGAAAGTGCGTAACCATATCTGCGGAATTTGTGGATGGAAGGCTTTCAACAGTAACCGTTTAAAGAATCACATGTACAAACACAGCGGGGAGAAGAATTTTAAATGTGATTCCTGTGATAAAGCGTTTACGACGCGGAAGATCATGAAAGCGCATTTCGCTAGGATGCATAAGCCTCCGGAGGCTGGTCCTGTAGTTCCAATCATGACGCATTATGGGCAGTACACTGGACAGTAA
- Protein Sequence
- MLRRNIFTVLRYSNVTPFNWNTKGFRCFYCSKQLRESNIKEHTDKHNAVDLDGFLKKNVITKDIPVKIDITNLACNFCPGTPIASLDEMILHIVEDHNEFYDTDTELCFFPFILKKDNNIINCVLCETEFDNFPSLITHLYKQHITHSFICQVCGLSFKDQVRLKRHITVSHIGHRCKVCDKVFDAYHKLDKHKEKFHGHVKTYDCNLCTGSFKSNYQLRVHLGKVHNVQKYRIQCEQCSKICTTKGAMVLHVQSLHSEIRYQCDECDYTTGIKWLVKLHKRKHTAVKDYTCSICERAFRRSSNLRAHMKVHAGEPRGGQKAKPLIKPTPAPPKRPVKSLAPSSSVLATKPKGLSSKEKRNIMIQNVLAILLKTTAMPFRWLKSSYRCFYCYDIFQEASDLKEHQTAHSDVSIKEKAMNNYWEPVVYIDISNMKCLLCPEEVTDLYDMINHLVSKHNVVYNKDVGTCMVAFKLNNFDVSCLACGASFYSFGPLLNHTNKDHKGASVILCDVCGQNYKDQNLLRLHVKSAHDNSGMLCPECGDKFETRSKLKTHQINSHGVERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMTTHLRDTHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTRKIMKAHFARMHKPPEAGPVVPIMTHYGQYTGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -