Evul010136.1
Basic Information
- Insect
- Eupithecia vulgata
- Gene Symbol
- -
- Assembly
- GCA_946478135.1
- Location
- CAMLCK010000044.1:6579702-6583470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6e-06 0.00027 21.9 0.5 2 23 86 107 85 107 0.96 2 10 8.2e-06 0.00061 20.8 0.5 2 23 113 134 112 134 0.96 3 10 4.1e-09 3.1e-07 31.1 1.6 1 23 139 161 139 161 0.99 4 10 1.1e-05 0.00081 20.4 0.5 1 22 167 188 167 188 0.95 5 10 7e-05 0.0052 17.8 4.7 2 23 197 218 196 218 0.97 6 10 1.9e-05 0.0014 19.6 1.2 1 23 224 246 224 246 0.98 7 10 0.0009 0.067 14.3 3.1 1 23 252 274 252 274 0.97 8 10 0.0012 0.091 13.9 4.8 1 23 280 302 280 302 0.95 9 10 5.6e-06 0.00042 21.3 0.6 2 23 309 330 308 330 0.97 10 10 0.00025 0.019 16.1 3.4 1 23 336 359 336 359 0.95
Sequence Information
- Coding Sequence
- ATGTCAGAAATTGTGTTCGTGAAAGAAGAACGGGCCAGCCCTGTACCTGAAACTTGTAGTTTGGGCGAAGAAGAACTACGGATCAAAGAGGAACCATGTACCTTTGTGGACAAATTTGAGAAATCAGAAGAAAGCTTCTCTGTCGAGATAGGAACAGTCAAATTAGAAGTAGATGAAGAACCTGATAAAATTAAGCTTGATGAAAATGaTGCAATACAAAGACACTTCCTCGCTTTCACACCAACTAAAGGAAAGACATGCGAAATCTGCAAGAAATCCTTTGCCAACCTCCAAAATCTCCAAAGACATGCCCTCATACACAACAAAATAAAGCTAGAATGCCCGATATGCGAAAGGAAATACACAAATCAAGAATCATTAAACAATCACCTAACAAAACATGACCCTGAGAAGTTCAAGTGCCAAGATTGCGGCAAAGTCTTTAAAAGGTCATCTAACTTATGGCAACACAAGCgaattcatttaaaaaacaaaccgCATCCATGTGATAAATGTGACAGATCCTTTGCAGTCCGAGCGAATCTCTTAAAACATCAGAGAAGACCGTGCAAGCCTGCTGAAGGCTTAACCTGTCACGTCTGTCTAAAAGAGTTCAAAAGGAAGTTTCTACTGAAAAGTCATTTAAGAAAGCACGACACGGATCGTCCGTATCAATGTGATTTATGTAAACTCACTTTTAAATACAAGAGCGCTGTCCAAAGGCATTTACAGTGGCACGCTGGGACAAGGCCCCACAAATGCCTATACTGTCCTAAAACTTTCACACACTCCGGATTAATAAAGCCACATTTAAGAGTGCACACTGGGGAAAGACCGTTTCAATGCTCAATTTGCTCAAAACTATTCGCACACAAGCATAACATGGAACGGCATAAGGTAAATCATGCAAGAATCAAACAGCTTGTCTGTGATTTGTGTAACAAAACCTTTCCTCGGGAGAGTCGGTTAAGATATCATATGAAAGTACATGTCGGTGGGAAGTTTTTTGACTGTGGTGTCTGTACTAAGCAATTTACTCATAAGTCGAACGTATTGAGGCATTATGAGAGGAAGCATCCTGGGAAGACTTGGTCGGGGAAAGAAACTGATGCATCGGTGGCGAAGAAGGTTTGGGATCAAGCGAAAGAGATGCTGAAGCCTCATTATACGGAGCCCGAGCTCATATTGggatga
- Protein Sequence
- MSEIVFVKEERASPVPETCSLGEEELRIKEEPCTFVDKFEKSEESFSVEIGTVKLEVDEEPDKIKLDENDAIQRHFLAFTPTKGKTCEICKKSFANLQNLQRHALIHNKIKLECPICERKYTNQESLNNHLTKHDPEKFKCQDCGKVFKRSSNLWQHKRIHLKNKPHPCDKCDRSFAVRANLLKHQRRPCKPAEGLTCHVCLKEFKRKFLLKSHLRKHDTDRPYQCDLCKLTFKYKSAVQRHLQWHAGTRPHKCLYCPKTFTHSGLIKPHLRVHTGERPFQCSICSKLFAHKHNMERHKVNHARIKQLVCDLCNKTFPRESRLRYHMKVHVGGKFFDCGVCTKQFTHKSNVLRHYERKHPGKTWSGKETDASVAKKVWDQAKEMLKPHYTEPELILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700329;
- 90% Identity
- -
- 80% Identity
- -