Basic Information

Insect: Eupithecia vulgata
Gene Symbol: -
Assembly: GCA_946478135.1
Location: CAMLCK010000003.1:4118496-4122713[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0003 0.023 15.8 0.2 2 23 191 213 190 213 0.95

2 14 0.00033 0.025 15.7 0.8 1 23 219 241 219 241 0.97

3 14 4.8e-05 0.0036 18.3 0.7 1 23 247 269 247 269 0.97

4 14 3.4e-05 0.0025 18.8 1.5 1 23 275 297 275 297 0.97

5 14 0.0016 0.12 13.6 1.1 6 23 306 323 304 323 0.96

6 14 0.00087 0.065 14.4 4.7 1 23 326 348 326 348 0.97

7 14 0.038 2.8 9.2 0.3 1 23 354 376 354 376 0.96

8 14 0.0028 0.21 12.8 0.7 3 23 501 521 500 521 0.98

9 14 5.2e-07 3.9e-05 24.5 0.3 1 23 527 549 527 549 0.98

10 14 2.4e-06 0.00018 22.5 0.2 1 23 555 577 555 577 0.98

11 14 8.8e-06 0.00066 20.7 0.4 2 23 584 605 583 605 0.95

12 14 4.9e-06 0.00037 21.5 0.6 1 23 611 634 611 634 0.96

13 14 9.7e-05 0.0073 17.4 0.4 1 23 639 661 639 661 0.98

14 14 0.0091 0.68 11.2 0.9 1 21 667 687 667 688 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0003	0.023	15.8	0.2	2	23	191	213	190	213	0.95
2	14	0.00033	0.025	15.7	0.8	1	23	219	241	219	241	0.97
3	14	4.8e-05	0.0036	18.3	0.7	1	23	247	269	247	269	0.97
4	14	3.4e-05	0.0025	18.8	1.5	1	23	275	297	275	297	0.97
5	14	0.0016	0.12	13.6	1.1	6	23	306	323	304	323	0.96
6	14	0.00087	0.065	14.4	4.7	1	23	326	348	326	348	0.97
7	14	0.038	2.8	9.2	0.3	1	23	354	376	354	376	0.96
8	14	0.0028	0.21	12.8	0.7	3	23	501	521	500	521	0.98
9	14	5.2e-07	3.9e-05	24.5	0.3	1	23	527	549	527	549	0.98
10	14	2.4e-06	0.00018	22.5	0.2	1	23	555	577	555	577	0.98
11	14	8.8e-06	0.00066	20.7	0.4	2	23	584	605	583	605	0.95
12	14	4.9e-06	0.00037	21.5	0.6	1	23	611	634	611	634	0.96
13	14	9.7e-05	0.0073	17.4	0.4	1	23	639	661	639	661	0.98
14	14	0.0091	0.68	11.2	0.9	1	21	667	687	667	688	0.93

Sequence Information

Coding Sequence: ATGAATATGACTTGTCCCGAAGTATGCCGAGCTTGCCTCGGTACCGGTCTAAAACTGTACAACATCGAAGATCTCACACTTCTGGAATTATATGAAAAACTCACAAGTTCTCTGTTGATAACCGAAGACTCCCGTCCGGACACACTATGCTACATCTGTCTCTGGCAGCTACAGAGATGTGCTCGCTTCTCGGCCTCGGCTCAGCGGGCTGAGAAGTACCTGCGGGATCTACTAGACAATAATGTACAGGTTACGCAAGAAACAGTTGCTACACTCAACATAGTCTCAACTCTATCTACAGTAACATTAGAGTCATTTACgcttaatgatgatgatgaggacagCTTAGCGGTCATCGACCCATCCTTTACAACAGCTATTAAAGAGGTTAAAATAGAGTTTTCAGACTCTGAGTTATCCAGAGAAAAGACTTTCGCTAAAACAGAAAGAGTTTTTACAGAAGAGATAGAACACGTACTAATAGAAGATGTAAAAATACCAACAGAAGAAAATATCATATTCAAAAAGGAAAACTCGCTTTACAATTGTGAAAAAACACGTAAACAGCTGATTTGCGAGCAATGTGACGAGCATTTCTCTACAGCGACTGCTTTGAACGGACATATTATGTCGATTCACACAGGAGAAAAACCGTATTACTGCAGCAATTGCAACCTTGGTTTTGAGAAACCGGACACATATAGACGACATATGGACTTACACGATATAGACAAACCTTACGCATGCAGTACTTGCCCGAAGAAATTCCAATTTGCCAAGGCTTTACAGAAACATATGAGTATACACGAGGAGGCAAAACCCTTTGCTTGTAGGGAATGTGATATGACTTTCAAAGTGCCATgtggtttaaaaaaacatatgttaacaCACACAGATAATCCGTATCTCTGTTGGTGCAAGAAAGCTTTTCGCTACGCTGCTAGGTTAAGAAGACATATGCTAACTCACACAAACCATACCTGCAATAAATGCAATGTCACTTTCGATAAAACGAGCAGTCTAAATAAGCACAAAAGAGACCATAAAGAAGGAAGGCCGTACTATTGCGAAAAATGCGATCTAGAATTTAGTATGCTTAGCATTTTCGCTATACACATGTCAAATCATAGCAAACCAACAGATATACAGCAAAATGTAGACATAACCCAACTAGTCAAACCGAAATGTAGAGAATCAACAGAGCAAAATGAAAATCAATCACACAGATTAAAAGATAGCGAACCGTTAGAGCAAAATAAAACCCAATTACCTCGATCAAAACATAGTGAATCAACAGAGCAAAATGAAAACCAATCACCCAGATCAAAAGATAGCGAACCGTTAGAGCAAAATAAAACCCAATTACTACAATCAAAAGATAGCAAAGCattagaacaaaataaaaaccaattacCCAGATCAAAACATAGTAAACcaacaaagcaaaataaaacCCAATTACCCAGACCAAAGAACCGTAGAACAAGAAAGGGACCTTTATGCCCAGTTTGCAATAAACAACAGCATTCACCTTCACAGCTTATTTCACATATGAGAGTTCACACCGGAGAGAGACCATATGCCTGTACCCAATGCGGGAAAGCTTCCCGAACTCCCACAGCCCTAAAACGACATATTAGAACTCACACCGGAGAGAGACCATACGCCTGTACTCAATGCGGGAAAGCCTTCAGAACTCCCACAGGCCTGAAAGGTCATGCGAGAACTCACACAGGAGAGAAAGTCTGTTCTTGTGAGGTCTGCGGAATATCCTTCACTCAGATCAGTGCGTTAAATAAACATATGGTTATACATACTGGGAAGCTCCCATATGTTTGCAATTTTTGTGGTAAAGCGTATAAACAAAGTGGGCAGTTaaattcacatgtaaagaactTACATGAAGGTGTAAGGTACATCTGTGATGTTTGCAACGGTCGGTTCACAGCTAAGCAATATTTACAGCGACATATGAACATCCATACTGGTATTAAGCCTTATAGCTGTATAAAGTGTAATCAAAAGTTCGCTACTTCGACGTCTGTAAGGCGTCATATGAAAAATTATTGTAAGAGCTAA
Protein Sequence: MNMTCPEVCRACLGTGLKLYNIEDLTLLELYEKLTSSLLITEDSRPDTLCYICLWQLQRCARFSASAQRAEKYLRDLLDNNVQVTQETVATLNIVSTLSTVTLESFTLNDDDEDSLAVIDPSFTTAIKEVKIEFSDSELSREKTFAKTERVFTEEIEHVLIEDVKIPTEENIIFKKENSLYNCEKTRKQLICEQCDEHFSTATALNGHIMSIHTGEKPYYCSNCNLGFEKPDTYRRHMDLHDIDKPYACSTCPKKFQFAKALQKHMSIHEEAKPFACRECDMTFKVPCGLKKHMLTHTDNPYLCWCKKAFRYAARLRRHMLTHTNHTCNKCNVTFDKTSSLNKHKRDHKEGRPYYCEKCDLEFSMLSIFAIHMSNHSKPTDIQQNVDITQLVKPKCRESTEQNENQSHRLKDSEPLEQNKTQLPRSKHSESTEQNENQSPRSKDSEPLEQNKTQLLQSKDSKALEQNKNQLPRSKHSKPTKQNKTQLPRPKNRRTRKGPLCPVCNKQQHSPSQLISHMRVHTGERPYACTQCGKASRTPTALKRHIRTHTGERPYACTQCGKAFRTPTGLKGHARTHTGEKVCSCEVCGISFTQISALNKHMVIHTGKLPYVCNFCGKAYKQSGQLNSHVKNLHEGVRYICDVCNGRFTAKQYLQRHMNIHTGIKPYSCIKCNQKFATSTSVRRHMKNYCKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -