Basic Information

Insect: Eupithecia vulgata
Gene Symbol: -
Assembly: GCA_946478135.1
Location: CAMLCK010000024.1:3346568-3347884[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.2e-05 0.0024 18.9 2.0 1 23 10 33 10 33 0.93

2 15 0.0061 0.46 11.7 2.3 3 23 42 62 41 62 0.98

3 15 0.00023 0.017 16.2 1.4 1 23 69 91 69 91 0.96

4 15 1.2e-05 0.00088 20.3 2.0 1 23 100 122 100 122 0.97

5 15 6.2e-08 4.6e-06 27.4 3.2 1 23 128 150 128 150 0.99

6 15 0.00013 0.0098 17.0 6.0 1 23 156 178 156 178 0.98

7 15 2.7e-06 0.0002 22.3 2.4 1 23 184 206 184 206 0.99

8 15 2.7e-05 0.0021 19.1 2.3 1 23 212 234 212 234 0.97

9 15 3e-07 2.2e-05 25.3 0.2 1 23 240 262 240 262 0.98

10 15 6.8e-07 5.1e-05 24.1 5.0 1 23 268 290 268 290 0.98

11 15 4.7e-06 0.00035 21.5 0.6 1 23 296 318 296 318 0.98

12 15 4.2e-06 0.00031 21.7 2.1 1 23 324 346 324 346 0.97

13 15 4.2e-06 0.00031 21.7 2.0 1 23 352 375 352 375 0.95

14 15 6e-06 0.00045 21.2 1.0 1 23 381 403 381 403 0.97

15 15 0.0041 0.3 12.3 4.5 1 23 409 431 409 431 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.2e-05	0.0024	18.9	2.0	1	23	10	33	10	33	0.93
2	15	0.0061	0.46	11.7	2.3	3	23	42	62	41	62	0.98
3	15	0.00023	0.017	16.2	1.4	1	23	69	91	69	91	0.96
4	15	1.2e-05	0.00088	20.3	2.0	1	23	100	122	100	122	0.97
5	15	6.2e-08	4.6e-06	27.4	3.2	1	23	128	150	128	150	0.99
6	15	0.00013	0.0098	17.0	6.0	1	23	156	178	156	178	0.98
7	15	2.7e-06	0.0002	22.3	2.4	1	23	184	206	184	206	0.99
8	15	2.7e-05	0.0021	19.1	2.3	1	23	212	234	212	234	0.97
9	15	3e-07	2.2e-05	25.3	0.2	1	23	240	262	240	262	0.98
10	15	6.8e-07	5.1e-05	24.1	5.0	1	23	268	290	268	290	0.98
11	15	4.7e-06	0.00035	21.5	0.6	1	23	296	318	296	318	0.98
12	15	4.2e-06	0.00031	21.7	2.1	1	23	324	346	324	346	0.97
13	15	4.2e-06	0.00031	21.7	2.0	1	23	352	375	352	375	0.95
14	15	6e-06	0.00045	21.2	1.0	1	23	381	403	381	403	0.97
15	15	0.0041	0.3	12.3	4.5	1	23	409	431	409	431	0.99

Sequence Information

Coding Sequence: ATGAAAGTACATGATAAAAGTAGATCCTTTGCCTGCAAGATTTGCAAATATAGATTTAATACTAAAGCAAACCTCAAAACTCACAAGGAAAATCTCCATAGAAGATTTAATGAGACTGTAGCCTGCACCATTTGTCATAAACAATTGAACAGTCAACAAATCTTAAAAAGGCACATGAAAATTCATTTCAACAGGGTTAAAACTCATGCATGTGATAAATGTGAGTTAAAATTTGGAGACAAGAGCACTCTCATTAGGCATAAAGCTACCCACACAGAAGACTTGCCAGGTAAGCCTCACTCCTGCCCGACATGTGGTAAAACCTTCtcagttatctattacttaaaaagtcatttaaaactcCACAGTGGAGAGAAACCATTTACATGCGAAAGATGTGGGAAAGCGTTCACACTTAAAAGCCACCTAAAGATTCATATGAGAACTCACACCGGTGAAAAGCCATACGCCTGTACGAAATGTGATAAACGCTACTCAAGCCATGCTCATGTAAAATATCACATGAAAACTCACACAGGAGAGAAGGGATATACTTGCGATGTGTGCGCAAAGTCATTCTCCGAAAGTAGTCATTTTAAAAGTCATATGCAGATTCACAGCGGTGAAAAGCCATTTGCTTGTGATGTATGCGATAAGAAATTTATAGGTCATACTAACTTGAAGCTTCATAAAAGAACTCACACGGGCGTCAAGCCGCACGTTTGTGATGTCTGCGGGAAGGCGTTTGCTCAAAAATCGGTACTGATAATACATATAAGgactcacactggagaaaagccataTGCCTGCCACAGCTGCGGTAAAACTTTCACAATGTCAACTCATTTGCGAATTCATATGCGCACACATACTGGAGAAAAGCCATATGCTTGCGAGTTATGCGGAAAGACATTTGCAGAGAACGCTCGGCTGAAAAGACACTTTAGAACGCACAGTGGAGAAAAGCCATATGCTTGCACGATTTGTCATAAATCATTCGCAGATTACACAAACATGAAAACTCATATGGTAACTCATACGGGGGAAAAGCCATATGCTTGTGATCGGTGTGGTAAGACCTTTACCCAACAAGGAACAATGAAAAAACACATACAGCATGTTCATTTAAAGGAGAAGTCTCATATATGTGAAATGTGTCCAAAGTCTTATGCCAAAAGACAGGCTTTAAAAGTCCATATGAGGTCTCACACTGGTGAAAGACCTTATAGATGTGAAAAATGTTGTAAAACATTTATAACAAATGAAATTCTGAGAAGACATTTGAAAACTCATGGTGAACTCATAGAGTTGAATTAG
Protein Sequence: MKVHDKSRSFACKICKYRFNTKANLKTHKENLHRRFNETVACTICHKQLNSQQILKRHMKIHFNRVKTHACDKCELKFGDKSTLIRHKATHTEDLPGKPHSCPTCGKTFSVIYYLKSHLKLHSGEKPFTCERCGKAFTLKSHLKIHMRTHTGEKPYACTKCDKRYSSHAHVKYHMKTHTGEKGYTCDVCAKSFSESSHFKSHMQIHSGEKPFACDVCDKKFIGHTNLKLHKRTHTGVKPHVCDVCGKAFAQKSVLIIHIRTHTGEKPYACHSCGKTFTMSTHLRIHMRTHTGEKPYACELCGKTFAENARLKRHFRTHSGEKPYACTICHKSFADYTNMKTHMVTHTGEKPYACDRCGKTFTQQGTMKKHIQHVHLKEKSHICEMCPKSYAKRQALKVHMRSHTGERPYRCEKCCKTFITNEILRRHLKTHGELIELN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705285;
90% Identity: -
80% Identity: -