Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1 6.5e+02 0.8 0.0 31 44 15 28 14 29 0.87

2 12 1.2 8e+02 0.5 0.0 31 43 33 45 32 47 0.87

3 12 1.2 8e+02 0.5 0.0 31 43 51 63 50 65 0.87

4 12 1.2 8e+02 0.5 0.0 31 43 69 81 68 83 0.87

5 12 1 6.5e+02 0.8 0.0 31 44 87 100 86 101 0.87

6 12 1 6.5e+02 0.8 0.0 31 44 105 118 104 119 0.87

7 12 1 6.5e+02 0.8 0.0 31 44 123 136 122 137 0.87

8 12 1.2 8e+02 0.5 0.0 31 43 141 153 140 155 0.87

9 12 1.2 8e+02 0.5 0.0 31 43 159 171 158 173 0.87

10 12 1.2 8e+02 0.5 0.0 31 43 177 189 176 191 0.87

11 12 1 6.5e+02 0.8 0.0 31 44 195 208 194 209 0.87

12 12 1 6.5e+02 0.8 0.0 31 44 213 226 212 227 0.87

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1	6.5e+02	0.8	31	44	15	28	14	29	0.87
2	12	1.2	8e+02	0.5	31	43	33	45	32	47	0.87
3	12	1.2	8e+02	0.5	31	43	51	63	50	65	0.87
4	12	1.2	8e+02	0.5	31	43	69	81	68	83	0.87
5	12	1	6.5e+02	0.8	31	44	87	100	86	101	0.87
6	12	1	6.5e+02	0.8	31	44	105	118	104	119	0.87
7	12	1	6.5e+02	0.8	31	44	123	136	122	137	0.87
8	12	1.2	8e+02	0.5	31	43	141	153	140	155	0.87
9	12	1.2	8e+02	0.5	31	43	159	171	158	173	0.87
10	12	1.2	8e+02	0.5	31	43	177	189	176	191	0.87
11	12	1	6.5e+02	0.8	31	44	195	208	194	209	0.87
12	12	1	6.5e+02	0.8	31	44	213	226	212	227	0.87

Coding Sequence: ATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGTCGTGGGAAGGGAATGGTTGGCCCGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGTGGGCGTGGGAAGGGAATGGTTGGCCAGCACGTGAGCTCCACTCTACACATGTGCCACTGGCTATCAACCAGTCGATGA
Protein Sequence: MCGRGKGMVGQHVSSTLHMCGRGKGMVGQHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGQHVSSTLHMCGRGKGMVGQHVSSTLHMCGRGKGMVGQHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGPHVSSTLHMCGRGKGMVGQHVSSTLHMCGRGKGMVGQHVSSTLHMCHWLSTSR

Sequence clustering based on sequence similarity using MMseqs2