Basic Information

Insect: Eupithecia vulgata
Gene Symbol: -
Assembly: GCA_946478135.1
Location: CAMLCK010000188.1:425172-427561[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.2 1.4e+03 -0.3 0.0 6 14 122 130 122 133 0.88

2 14 0.27 1.8e+02 2.6 0.0 4 14 139 149 137 153 0.87

3 14 0.28 1.8e+02 2.6 0.0 4 14 158 168 156 172 0.87

4 14 0.11 72 3.9 0.0 4 14 177 187 175 191 0.87

5 14 0.27 1.8e+02 2.6 0.0 4 14 196 206 194 210 0.87

6 14 0.28 1.8e+02 2.6 0.0 4 14 215 225 213 229 0.87

7 14 0.11 72 3.9 0.0 4 14 234 244 232 248 0.87

8 14 0.27 1.8e+02 2.6 0.0 4 14 253 263 251 267 0.87

9 14 0.28 1.8e+02 2.6 0.0 4 14 272 282 270 286 0.87

10 14 0.29 1.9e+02 2.5 0.0 4 14 291 301 289 305 0.87

11 14 0.28 1.8e+02 2.6 0.0 4 14 310 320 308 324 0.87

12 14 0.11 74 3.8 0.0 4 14 329 339 327 343 0.88

13 14 0.28 1.8e+02 2.6 0.0 4 14 348 358 346 362 0.87

14 14 0.27 1.8e+02 2.6 0.0 4 14 367 377 365 381 0.87

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.2	1.4e+03	-0.3	6	14	122	130	122	133	0.88
2	14	0.27	1.8e+02	2.6	4	14	139	149	137	153	0.87
3	14	0.28	1.8e+02	2.6	4	14	158	168	156	172	0.87
4	14	0.11	72	3.9	4	14	177	187	175	191	0.87
5	14	0.27	1.8e+02	2.6	4	14	196	206	194	210	0.87
6	14	0.28	1.8e+02	2.6	4	14	215	225	213	229	0.87
7	14	0.11	72	3.9	4	14	234	244	232	248	0.87
8	14	0.27	1.8e+02	2.6	4	14	253	263	251	267	0.87
9	14	0.28	1.8e+02	2.6	4	14	272	282	270	286	0.87
10	14	0.29	1.9e+02	2.5	4	14	291	301	289	305	0.87
11	14	0.28	1.8e+02	2.6	4	14	310	320	308	324	0.87
12	14	0.11	74	3.8	4	14	329	339	327	343	0.88
13	14	0.28	1.8e+02	2.6	4	14	348	358	346	362	0.87
14	14	0.27	1.8e+02	2.6	4	14	367	377	365	381	0.87

Sequence Information

Coding Sequence: ATGAACTTTTCACCCTATCACAGTGATCTACTTAATCTCATTAAAGAAAGATGTAGGGAAAATTGGAgAGAGTCTATCGATAAGGCTGGATACGCTAAGTGGAGACCAGAGGCGCCACACTTTACTGCACGACTCGGGTTCATCGCCAGAGATGGTCTGCTTTACGGCTACACGAATGATGTCAGGGACGTGCCTTACATATGTGAAAAACCTGCTTTGAAACAATATATATATCAAGCGACCGAAACTACTGAGACACAAACGATATCAACAGAGCAAGAGGAAGGATTCATGCCAATATGGTATCCTAAATCAGTAGATGAAGACGAAACAATCGAACCAACTTCTGTATCAATGTTGGAAGACGAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACGAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACGAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACGAAGCGATCGATTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACGAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCATCAGGAGAGTTGGACAAAGCGATCGAGTCAATATGGAACACTGAATCAGTACCGGCAGCAGGAGAGTTGGACAAAACGATCGAGTCAAGAGATGGACGAACCGATTAA
Protein Sequence: MNFSPYHSDLLNLIKERCRENWRESIDKAGYAKWRPEAPHFTARLGFIARDGLLYGYTNDVRDVPYICEKPALKQYIYQATETTETQTISTEQEEGFMPIWYPKSVDEDETIEPTSVSMLEDEAIESIWNTESVPASGELDKAIESIWNTESVPAAGELDKAIESIWNTESVPASGELDEAIESIWNTESVPASGELDKAIESIWNTESVPAAGELDKAIESIWNTESVPASGELDEAIESIWNTESVPASGELDKAIESIWNTESVPAAGELDKAIESIWNTESVPASGELDEAIDSIWNTESVPAAGELDKAIESIWNTESVPAAGELDEAIESIWNTESVPAAGELDKAIESIWNTESVPASGELDKAIESIWNTESVPAAGELDKTIESRDGRTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -