Etri030013.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041628.1:2103926-2121660[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5 3.8e+02 2.7 0.5 1 23 224 246 224 246 0.71 2 13 0.17 14 7.2 1.4 1 20 301 320 301 322 0.94 3 13 1.1 91 4.7 0.2 2 23 338 360 338 360 0.92 4 13 5.7 4.8e+02 2.4 1.2 1 15 424 438 424 447 0.80 5 13 3.8 3.3e+02 3.0 4.2 1 21 773 792 773 793 0.93 6 13 0.06 5.1 8.6 0.7 1 23 805 827 805 827 0.96 7 13 0.17 15 7.2 2.5 2 23 833 854 832 854 0.97 8 13 0.004 0.34 12.3 0.2 3 23 960 980 959 980 0.89 9 13 2 1.7e+02 3.9 2.4 1 23 995 1017 995 1017 0.97 10 13 1.6e-06 0.00014 23.0 2.6 1 23 1023 1045 1023 1045 0.98 11 13 8.1e-05 0.0069 17.7 1.0 2 23 1051 1072 1050 1072 0.93 12 13 0.064 5.4 8.6 6.4 2 23 1079 1101 1078 1101 0.91 13 13 0.0011 0.096 14.1 0.5 3 23 1138 1159 1137 1159 0.95
Sequence Information
- Coding Sequence
- ATGTCTGTAAGCAGGAAGAGAAGCAGAAAATCTAAAATAGAAGTTCGCGAAGACGACTGTGAATTCGAGGTTGTGTGTGACGACAACGACGACGACGTGAAGCAATTGCAGTTGCTAGAGCCCCTGCCTCCAGAAGCAGGCCCAACAGATATAGTGAAATATAATCCAGAATTATATATACCTGATCATGATTACTGCTGGCCGTTTACTCCTTTTCGAAGGATCCCATACTCATGTCCTAAACCTAAATATATCAAACGACTCAAGCGCTTAAAAACCAGCACCATTGTTGGCGTTACAAAAACACCCTTTGATGATCAGAGTGTTAAAATAGAGGTTGAGCCGTACAAAATTCCTGACGTGGACTTCCAGGCTGCTGTATTGGAAAAAATGGATgttaatatcaaaaaatataaaggtGATGACGATGGGAAGATTAGGATGTGCAAATACAGTCCTGATTTACTCTTCAAAGAGTCAAAACAAATTGCTGAGACATCTGACAATTTCGCGGACAAAATACTGGATATAGAGATGCGGAATCTATGGGGTAATGTTTTGTATACTCCCAATGATGTTCCTGCGCAGGATATAAAGCTTCAAGCTGCTATTCAGGCCTGGCAGAATTGGTATCACGGTTCTCGTATGGTACGAGAAGCACCGTTATTCTACCAGTGTCACATCTGTGAGCAAGCATGGTGGAGACTGCAACCATTCAGAGACCACATTCGAAACCATGACAACGCAAAGCTTATTGTATCCATGAAAGAGCATCTACACGAATCATTCATCATTGCAAGCTATGAGATTGTTAACAAACTTATATACATACCGATTAATGACGGTGACTGCTATCGCTGTGGTGAAAACGTAGAGTTCCATAAAGATCAATGTCTCGCATACACTTGTAGTCGTTGCTCAAAGTTTGTCTACACATGCACAAGCTTAAGAGCCCACGAAGCCATGTGCTTATACGTCAACTTGGTTATCTACAACATTTCTATAGAACGTCAATGCACACTAtgcaaaaatgttttaaactccATATCCTTAATGGAAAAGCATATGGTTGAAGCTCACTCAGTACGCTCGGATATCCCTATATCGGATTGGTCTAAAAACTGTGCTGCCTGCGGAGAGAAATACTTTACATTTACTATGCACAATTGTTGTAAAAGTGGAAGGAATTGCAGCTGCGAGCATTGTTGTAGAAAGTTTGCTTCGAATAAACTCGCTGTTTATCACATGTTGGGTATGCATAACAAGCCATTTAACTGCCGTATCTGCAATAAGGAATTAAAGACTAAATGCCAAGAGATGGAGCATCTTGTTGAAAACCACATGAGCAGTTATAAAATAGTGTATAAGTGTACAATTTGCTCAGAAAATAATGTGTTGTTTATGGACAACAAATCTATGGTTTTGCATCGACAGTTATGGCATCAAAAGAAGTTTGATAAGAGGAGACTGTTTTTTGAAATGaTGTTGGTACCTAAAACCTGCCTAGACGAGGATAGCATTGAAGAAGCCATTCTAACTGTCGAAGACATCGGTCAACCCTCAAAATCCTTCTCAGACTTGACAGCTGACGTTAATGTCACAGTAGACGAAATCGATGTTAAGAAAGAGCCAATGGAGGTTGACGATAACGAAGAAGATTACGAAGAGATGCTTCTTAAAATGTTTAATGAAACGCCAAATAGACTTGCATCTAAAGGTAAAGTTACAAGTGTCAGTAAAGTGGAAGAACCCAAGTCAACAGTAGTTTTTAAATTTGATGAAGTTTACAAGTCAGAGGAGCACACAGGATTTGATTATAGCAGTGTGAAAATAAAAGCAGAGCCGATCGATGATGTCGATGTTATAGACAACACTGTTAATGAAGTTCaaatcaaaactgaaccaatCGATCCATCTGAAATTAATGATGAAATGATGGAAGAATGCTTTGATTACGATGAAGCTAGTGTTAAAATCGAGAGAACTGATGAACCTGATGATGAAAATGATGATTTTGTCATTGATAATCCAACGGGGAGCGGAGATTCAACTAGCAAAGATAAAATAAGCAGCAATGATTCAAGAAGCAGTCATGTTGGGATAGGTGAAGATGAACTAATCATCAAAGAAGAGATTGATGACGCTATCTCAATCAAAACGGAAGATGATGTGGAGGTATCTCCATCGGAACCGTTCCACAAAATAATCACAGAGCTAGAAATGTTTAGAGAAGACCAAGAGGCAAGATCTAAATTCAAATATGAATATTCGATTGAGGTAATCAATTCAGAGGGaaagttaaaacaaaagaagatGTATACATGCAGGAAGTGTGGGTACACGGCGCATCACAAGAAATATAGAAAACACATGGACACAAAATGTCTCGTTTCACCAGGCACTAACTGTAGTTACCCGTGCTCTTTGTGTGGACTTAAATTTGTAATGTTTAAGAATTATGCGTTACATTTTGAGAAGCATGGGTACGATTTGATGACTTGCTTTTTATGTGGGGAGAAATTTGATGTGGAGTTTAAGTTTCTATCGCATATGCATAAACATATAAAGGGCAGTTTTGTCGGTCTACATATACTGGATAAAAGTGGAGAGGAGATTAAGAGATCGCAAAAACGGGTCACATGCATGAACTGTAAACAAACAGTGGATCAAGACACGATGTTCGCGCATTGGGAAGAACATCATCTCACACTGATAGACATCAAAAGCGAAGAAGAATCGAAATTAGTGATCAAAGAGGAACCTACCCCAGAGCTGACCGTGGACTGCGAGCGTGTGACCATGAACAATAAAGAGTTGGAACCTGCTATGCTTAAATTGGCGACCGACCATCTCCAGATGACTTCAACTGACAAGGAATGCATCATCTGTTACCGCGTGTTCGCGCGCCGCTACGATCTGAAGAGACACCTCGTGGAGCATCTACTCATGGACGCCTATATGAAGAAGATTAAATacagAGATTTCCGCTGCCAAATCTGCTCGGATGGCTTCCCTCACCAAGATAGATACAAGTTCCACATGCGAGGGCACGGAAACATGCCCATATTCATGTGTGAACTGTGCAACAAGACCTTTAGCGACTCGAGTAACTTCGCCAAGCACAAAAAAACCCACAACGTGCGCTGTCTCGTTTGTGACATCTGCAAAAAGAAGTTCCACTCCAAGTCTGCGCTCGAGAAACACATCGGGGAACATTACTCCAAGCCCCTAACAAAGTGCATGTATTGCACTAAGACCTTCCATTCAAAGACAAGCTTTAAGAAACATAAATACCAgGTTCACCAGAAGCCAAGATATAGATGCATTCTCTGCGATCTGTTCTTTGTGACGGTGCAGAGCAAATGGGACCACGACTGGGAGGTTCACCAAGAGCGAAAGCACGTAGCTGACTGCCCTATCTGCCACAAGTCCTTCCGGAAGTTCGCCGACGTGAAGGTCCACGCCCGTGCCGAGCACAACGCGGACGTGAACCTCATAAAGAACTCCAGGGTCAAGGTTTCTTCTTCAGAGAAGAATCCGCAGCAGTATAACGTCAGGGATCGAAAGGTGAAGAAGAAAGAGCGTCTTGACCTGTGA
- Protein Sequence
- MSVSRKRSRKSKIEVREDDCEFEVVCDDNDDDVKQLQLLEPLPPEAGPTDIVKYNPELYIPDHDYCWPFTPFRRIPYSCPKPKYIKRLKRLKTSTIVGVTKTPFDDQSVKIEVEPYKIPDVDFQAAVLEKMDVNIKKYKGDDDGKIRMCKYSPDLLFKESKQIAETSDNFADKILDIEMRNLWGNVLYTPNDVPAQDIKLQAAIQAWQNWYHGSRMVREAPLFYQCHICEQAWWRLQPFRDHIRNHDNAKLIVSMKEHLHESFIIASYEIVNKLIYIPINDGDCYRCGENVEFHKDQCLAYTCSRCSKFVYTCTSLRAHEAMCLYVNLVIYNISIERQCTLCKNVLNSISLMEKHMVEAHSVRSDIPISDWSKNCAACGEKYFTFTMHNCCKSGRNCSCEHCCRKFASNKLAVYHMLGMHNKPFNCRICNKELKTKCQEMEHLVENHMSSYKIVYKCTICSENNVLFMDNKSMVLHRQLWHQKKFDKRRLFFEMMLVPKTCLDEDSIEEAILTVEDIGQPSKSFSDLTADVNVTVDEIDVKKEPMEVDDNEEDYEEMLLKMFNETPNRLASKGKVTSVSKVEEPKSTVVFKFDEVYKSEEHTGFDYSSVKIKAEPIDDVDVIDNTVNEVQIKTEPIDPSEINDEMMEECFDYDEASVKIERTDEPDDENDDFVIDNPTGSGDSTSKDKISSNDSRSSHVGIGEDELIIKEEIDDAISIKTEDDVEVSPSEPFHKIITELEMFREDQEARSKFKYEYSIEVINSEGKLKQKKMYTCRKCGYTAHHKKYRKHMDTKCLVSPGTNCSYPCSLCGLKFVMFKNYALHFEKHGYDLMTCFLCGEKFDVEFKFLSHMHKHIKGSFVGLHILDKSGEEIKRSQKRVTCMNCKQTVDQDTMFAHWEEHHLTLIDIKSEEESKLVIKEEPTPELTVDCERVTMNNKELEPAMLKLATDHLQMTSTDKECIICYRVFARRYDLKRHLVEHLLMDAYMKKIKYRDFRCQICSDGFPHQDRYKFHMRGHGNMPIFMCELCNKTFSDSSNFAKHKKTHNVRCLVCDICKKKFHSKSALEKHIGEHYSKPLTKCMYCTKTFHSKTSFKKHKYQVHQKPRYRCILCDLFFVTVQSKWDHDWEVHQERKHVADCPICHKSFRKFADVKVHARAEHNADVNLIKNSRVKVSSSEKNPQQYNVRDRKVKKKERLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -