Etri030624.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:1533098-1542194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.26 22 6.6 6.2 1 23 40 63 40 63 0.95 2 17 0.0037 0.32 12.4 0.3 2 23 93 115 92 115 0.96 3 17 0.045 3.8 9.1 8.4 1 23 220 243 220 243 0.98 4 17 2 1.7e+02 3.9 0.1 2 23 356 377 355 377 0.94 5 17 1 86 4.8 0.0 3 23 406 427 404 427 0.91 6 17 0.45 38 5.9 2.0 2 23 448 469 447 470 0.93 7 17 0.0075 0.63 11.5 1.7 3 23 477 498 475 498 0.97 8 17 0.19 16 7.1 5.7 1 23 503 526 503 526 0.91 9 17 1.3 1.1e+02 4.4 0.4 2 20 529 547 528 549 0.91 10 17 0.021 1.8 10.1 1.9 1 23 601 624 601 624 0.97 11 17 0.0073 0.62 11.5 0.3 2 23 699 721 698 721 0.94 12 17 4.4e-05 0.0038 18.5 0.5 3 23 728 749 726 749 0.95 13 17 0.0074 0.63 11.5 5.9 2 23 754 776 753 776 0.95 14 17 0.051 4.3 8.9 0.3 1 23 781 804 781 804 0.97 15 17 0.0017 0.14 13.5 5.5 1 23 808 831 808 831 0.97 16 17 0.067 5.7 8.5 1.7 3 23 839 859 838 859 0.96 17 17 1.4e-05 0.0012 20.1 1.1 1 23 865 887 865 887 0.98
Sequence Information
- Coding Sequence
- ATGGAGATCGAAGATCAAATAAGGGCCGCTAAACTCTCAGGCGACAAAATTAGACAGAACATAGCATGTATACTCAATAACACCACCGCCGTTCCGTTCTGGTACAGAAACAACGGTTTCAACTGCTTGTTCTGCGAAAAATCCTACCCCCAGTGCTATTTGCTACACAATCATTATCAAAACAAACACTCAACCGTCGACTTAGACGAAAACCACCCAATACTAAAGAGATATAGACAAAACAACACCTTCCTTAGACTCAACATTGTAAACTTGACCTGCAAAATCTGTTTCCAATCCTTTGAAACCCTAGACGGAGTAACGTCCCATCTAAAGATCGATCACAGTCTCAATTTTGACACTAAAGTCACCAATAACCTCATAGAAACCTTCAAATTAACTGATGATTCTCACACTTGCCATATATGTATGAGACCCGAAAAAGAGCATCTTATGAAAAAGGAAAACGTTTTAGACGAAGCAGGGAGTAATTTAAGCGTTGAACAAAAAAGCCTCTTAGATTCCGCTACAAAGAGTAAAGAAGTCCCTGTTAGTCAGAGAATAGTCAAAAAACAATCAGTAAAAGACCTCAGGAAGGCTATAGCTAGTTTCATCAACTTGACAAACGCAATTCCCTTCAAATTCTTCCGCAATAAATTCAGATGTTTCTACTGCACACAGGAATTCGACTTGTGCgaccatttaaaaaaacacacgaGAAAATATCACCCAATATGCGAAACTAATTTCCGAGCTATGAAACTTCGTGGAAGATCAGTTGGTGTCAAAATGAAAATAGACACTTCGTCTATGAGCTGCACAGTGTGCATGCAAGATCTCCCCGATTTTAATTCAGCTAAGGAACATTTAGAACTAAAACATAATGCTAACGTGAAAAATTTAGGCCATCTCCAACCGTTTAAATTGATACACGATGAGTTTTCTTGCCCGATCTATCGGATGCCCGGAAAGGCCGACCGAATAACGTCCGAGCGACGGAGAAAAAACTTGAAAACGATACTTGATAATACGACCATTATCCCCTTTAAATGGAAGGGTATGATCGTATGTTTCTACTGTAGCGCGCCCATTGACGATTACGTAGAGTTCAGGAAGCATACGAAAGCGCACGGACCTTGTAGCATCAAACACTTTGCcatgaaagaaataaaaggcAAAGGAATTGCTGTAAACTTAGACGTTTCAGAAATTGCGTGTGAAATTTGCGAGGAACAGTTCAAAAGTGTCGAAGTCATTGTAGAGCATTTGAGGAATGAGCACAGTCTTTTCTATGATAAGGAAGTTTACAGCGAAATCTTAGAATACAGGTTGATGGATTTAATCTGTACTCAATGCGATAAGCAGTTGGAAACGTTTAGGCGACTTGTCAGTCATGTTAACAAGCATCATCCTGTGAACAGATTTGGCTGTCACGATTGTGGACGACTGTTTAATAAGAAACGAGATATATTCTCGCATATTAACGTCTACCATCGATTGGGAGGATACGTTTGCAAGCATTGCAGTTTTAAGTGTAAAACCCGCATCGAATTGCGAACGCATTCGTCACAGGTTCACCCAAAAACGTGTGACTTTTGCACAAGGGAGTTCCAATCTACGCTTGGTTTGAAACAGCATGTGATTAGGTGCAAAGTCAGGTTGCTCGCACAGGGCGAAACTGAGTTACTAAACCATAATGTGAGCACAGCGCGAACCCACGAGCAAATCGTTCGAATCAGGCAGAATATCCAATGCGTTTTAAACATGTCCACCGCTGTCCCCTTTAAGTTCAGAGTCAAATTCAGTTGTTTCTACTGCTTCATCAAGTTTGACGACTACGAAGTTCTTAAACAACACACTAAAACTGAACACACGGTTTGCGATATCAAATGTAAGTCCATGAAGTCTTGTAAAGGCAAACGGACCTTCGTCAGGGTGGATATCGCGGACTTGGCTTGTAAGCTCTGCTCTATACCTATGCCCGACTTAGCAACGTTCATCGACCACGCCATCACGAACCATAACGCGGATTACGACAAAACTGTCAGTCTTGATACTTGTTTCGAGCCTTACCGCTTGCATAAAGGTAACATCCCCTGCCTTGAATGCCCTAAAGTCTTCCGTTACTTAAACACAATGCTTAAACACTTCAATTCTGAGCACAGCAACAATAACGTGATCTGCGATTACTGCGGCCGTGGTTTCCGTAGCACGACCAACCTCAAAATGCATTTGCAGAACAATCACACTGGTTCCTGTGAGTGCAAAACTTGCCATgctaagttcaaaaatcactcTGTTCTCATCCGTCATATGGCTAAAATCCACAATGAGAAGACTTTCAAATGCCCCAACTGTTCTGATATGTTTGAATCCGCGTACCAAAGACAAATACATCTCATAAAAGTTCATGGGATCGGTCATAAATGTGAATACTGTGGaaagatgtttaccaaacattcATTCATGGATATCCATGTGAGACGGACGcatttgaaagagaaaaatgtAGCTTGTTCCGTCTGTAACGACAAGTTCTTTGATAACCATCTGTTAAGGATGCATATGGTGAAACATGACGGTGAGCGGAAGTTCAAGTGTGAATTGTGTGGGAAGGCATTTTTAAGGCAGAAGAATTTAAGGACGCATTTGGATACGCATAAAAAGTATGGTTTTGTTCAGTGA
- Protein Sequence
- MEIEDQIRAAKLSGDKIRQNIACILNNTTAVPFWYRNNGFNCLFCEKSYPQCYLLHNHYQNKHSTVDLDENHPILKRYRQNNTFLRLNIVNLTCKICFQSFETLDGVTSHLKIDHSLNFDTKVTNNLIETFKLTDDSHTCHICMRPEKEHLMKKENVLDEAGSNLSVEQKSLLDSATKSKEVPVSQRIVKKQSVKDLRKAIASFINLTNAIPFKFFRNKFRCFYCTQEFDLCDHLKKHTRKYHPICETNFRAMKLRGRSVGVKMKIDTSSMSCTVCMQDLPDFNSAKEHLELKHNANVKNLGHLQPFKLIHDEFSCPIYRMPGKADRITSERRRKNLKTILDNTTIIPFKWKGMIVCFYCSAPIDDYVEFRKHTKAHGPCSIKHFAMKEIKGKGIAVNLDVSEIACEICEEQFKSVEVIVEHLRNEHSLFYDKEVYSEILEYRLMDLICTQCDKQLETFRRLVSHVNKHHPVNRFGCHDCGRLFNKKRDIFSHINVYHRLGGYVCKHCSFKCKTRIELRTHSSQVHPKTCDFCTREFQSTLGLKQHVIRCKVRLLAQGETELLNHNVSTARTHEQIVRIRQNIQCVLNMSTAVPFKFRVKFSCFYCFIKFDDYEVLKQHTKTEHTVCDIKCKSMKSCKGKRTFVRVDIADLACKLCSIPMPDLATFIDHAITNHNADYDKTVSLDTCFEPYRLHKGNIPCLECPKVFRYLNTMLKHFNSEHSNNNVICDYCGRGFRSTTNLKMHLQNNHTGSCECKTCHAKFKNHSVLIRHMAKIHNEKTFKCPNCSDMFESAYQRQIHLIKVHGIGHKCEYCGKMFTKHSFMDIHVRRTHLKEKNVACSVCNDKFFDNHLLRMHMVKHDGERKFKCELCGKAFLRQKNLRTHLDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -