Etri030707.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:2821518-2843116[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00016 0.013 16.8 0.4 1 23 303 325 303 325 0.98 2 10 0.0048 0.4 12.1 1.1 2 23 350 372 349 372 0.96 3 10 0.0096 0.82 11.2 1.9 2 23 395 417 394 417 0.94 4 10 4.9e-05 0.0041 18.4 1.1 1 23 421 443 421 443 0.98 5 10 5.8e-05 0.0049 18.1 2.2 1 23 448 470 448 470 0.98 6 10 1.3 1.1e+02 4.5 2.4 1 23 477 500 477 500 0.91 7 10 0.0027 0.23 12.9 1.6 1 23 507 530 507 530 0.93 8 10 0.15 13 7.4 3.5 1 23 536 560 536 560 0.95 9 10 0.00099 0.084 14.3 3.2 1 23 565 587 565 587 0.94 10 10 3.9e-05 0.0033 18.7 2.6 1 23 594 616 594 617 0.96
Sequence Information
- Coding Sequence
- atggcAGTGGAAAAACTTGAAATAGAGACTTATTTTGGGAAGTGTAAATGCTGTCTCAAATATGGCTATCTGAGACCTATGTGGGACGAACATGAAGACGCGAATGAAGCCTACGGGAAGATGCTCACGCAATGTTTTTCTATTCCGTGGACTATAGAAGGTTCGGAGGAAGAGGATCAGATCTGTGAGGATTGCATATGGAAGCTGCAAGAGGCCAACAAGTTCAAGCAACAGATTATTGAGAGTCAGGCTGCAGAGCAAAAAATAGTAATTGAAGATGACGAAATAAAAACGGAACCAGAAGAAACATATGACGTTGAATACTTAGATGAAGAGCTTTTGCATAAAAACACTGAAGAGACAGAGACCAATGAGCAGAACGGGGcagatgttgatgatgatgcagATTATGGTGAAGACATTGAAATGATTGACGATGACAttgaaaatgatgatgatgaatcataTAAATTAGATGAGGATGAggaagatgatgatgaagATGATAAGGACTTGAAGGTGGCTAAATCAGTGCCGAGAAAACGAACGCCGCGGTCAGTTGAAACTGAGAGTGAAACTGACGCATCAAAACCGAAGTGGCCCAAGAAACTGCCATTACAGGAGCGATGGAAGACTTACAGGCAGTACACAGATGAAGATATGTTGTCTGCTGTGAATGAGGTTCTGACAAAGACCATCAGCCAGAGAAAAGCCTCCAGCAAGTACAACGTTCCTGTCAAGACGCTCAGCGCGAGGATCAGAGCTATTAAGGATTTGGAGGAGGCTGAAGACCAAACAAAAGGCGACTACGGAGCACCAGCGGTCATACAGAAACACAGAGAGAATATACAGTCCGTACTGGCTTACTCCAACGCGACGCCTATACGAGGCTTTTGGGGAAGCGGCTATGTTTGCTCAATATGCCCCGATCAATACACAACGCCTTCTGATCTTAAAACACACACGCAAAAGCATGAAGATCTCCCGCAACTCTTCAAAATCAACCACGTTAGCGGTCATATTGCTAGGCTGGACATAACAGACCTGAAATGCAAACTTTGCAACACGAAATTCGTGAAGCTACAACCCCTGATGCAGCATCTAAAGAGAATACATGGCAAACCTATGCATTATGATATAGATAACCATATGGTCCCGTTCAAATTTGATTCGGAATTGCTACAGTGTCCAGATTGTACGGATACTTTTGAACGCTGCAAAACCTTATTCGAACACATGGCAAACAAGCATTATAGGAACTATGTTTGCAATATATGCAATAAAGGGTTCTTCAATCTCTCCCATCTAGCTGGGCACAAAGAAACGCACACGTCTGGTCAATTTAAATGCGGTGAATGTGGAAAAGTCTTCTCTACACAGCGGAAGAGATACAAACATGAACGCTTACATGCCACTCGGGGTAAAAAATACGAATGTAAATTCTGTGAACTCAGGTTCTATAATGTAACGCAGAAGTATAACCATGAGTTGAAAACACATCCAAAAGAAAAGATTGAATTCAATTGCTACTTTTGCGAGAAAACATATTCTAGTTTGAAATTACTTAGAACACATCTCACAGAAATTCATTTGGAGCCCCAGAAGCATGAATGTCCTGTGGAAACTTGCAAGAAATATTTCCTCCGAAAGCATACGTTGGTATTGCATATTAAACAGCACGATTTTAAACGTTTTCAATGCCCAGAGTGCTTTAAGATGTTCAAATCAAATGATACTCTCAAATGTCATTTATCAGCACACACAGAGACAGAAAGTAAATTCAAGTGTAACGAGTGCGGTGTCAGTTATTTAAGAAAGGATAATTTGGGCAGGCATATGAAGAAACATCATTAG
- Protein Sequence
- MAVEKLEIETYFGKCKCCLKYGYLRPMWDEHEDANEAYGKMLTQCFSIPWTIEGSEEEDQICEDCIWKLQEANKFKQQIIESQAAEQKIVIEDDEIKTEPEETYDVEYLDEELLHKNTEETETNEQNGADVDDDADYGEDIEMIDDDIENDDDESYKLDEDEEDDDEDDKDLKVAKSVPRKRTPRSVETESETDASKPKWPKKLPLQERWKTYRQYTDEDMLSAVNEVLTKTISQRKASSKYNVPVKTLSARIRAIKDLEEAEDQTKGDYGAPAVIQKHRENIQSVLAYSNATPIRGFWGSGYVCSICPDQYTTPSDLKTHTQKHEDLPQLFKINHVSGHIARLDITDLKCKLCNTKFVKLQPLMQHLKRIHGKPMHYDIDNHMVPFKFDSELLQCPDCTDTFERCKTLFEHMANKHYRNYVCNICNKGFFNLSHLAGHKETHTSGQFKCGECGKVFSTQRKRYKHERLHATRGKKYECKFCELRFYNVTQKYNHELKTHPKEKIEFNCYFCEKTYSSLKLLRTHLTEIHLEPQKHECPVETCKKYFLRKHTLVLHIKQHDFKRFQCPECFKMFKSNDTLKCHLSAHTETESKFKCNECGVSYLRKDNLGRHMKKHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00704905;
- 90% Identity
- iTF_00704905;
- 80% Identity
- iTF_00704905;