Etri030621.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:1511028-1520662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.26 22 6.7 0.8 1 19 78 96 78 98 0.95 2 13 0.56 47 5.6 0.1 2 23 128 150 128 150 0.94 3 13 0.026 2.2 9.8 0.2 2 23 173 195 172 195 0.95 4 13 9.4 8e+02 1.7 0.1 1 8 199 206 199 209 0.86 5 13 0.0015 0.13 13.7 0.6 2 23 305 327 304 327 0.93 6 13 1.3 1.1e+02 4.4 1.7 2 23 350 372 349 372 0.91 7 13 0.00046 0.04 15.3 0.1 1 23 379 402 379 402 0.94 8 13 0.00028 0.024 16.0 1.9 2 23 408 430 408 430 0.97 9 13 0.0023 0.19 13.1 0.1 2 23 436 458 435 458 0.95 10 13 0.0017 0.14 13.5 0.9 1 23 465 488 465 488 0.96 11 13 0.012 0.99 10.9 0.9 1 23 494 516 494 516 0.94 12 13 4e-05 0.0034 18.7 1.8 1 23 522 544 522 544 0.98 13 13 2.8e-05 0.0024 19.1 2.5 1 23 550 572 550 573 0.95
Sequence Information
- Coding Sequence
- ATGCCATTTCGCCGAGTCTACGTCACGCGCCCCACTCTTCGAGCCACGGGTACCTCGCCGCGGCACCGCAGATATAAGGCGAAGCACGGCCGCATCTCGTCAGTCGTCAGTTCAGCTAGGAACGGACAACCTCTCGACGTCGCATTGGAGAACGAACAACAACTTGCAACTTTGCTCATCACCATAATCCAGAACTCAACTATCATACCATTCCGATGGTACCACGGGAAGTTTATGTGTTTTCACTGCCCCACAAAACTATCCAGTACACAAGAACTGAGAGAGCATAACCTATGTGGACATAGCGAGATTAATATCACAGAAATTATAACCAAGTTCGTTTATAACGACAGAAGAATAAAACTCGACACCGGATACGCGAAATGTAGTCAATGCGATGAAGAAATCTACGATATATCAGACTTTATCGATCATTTATCGAATATCCATAACATTGTATACGATCCGGATATCGCTAGGCATTTTATATCCTTTAGGCTGTCCGATGATGAAATGAGCTGTTTGGAATGTGATGAGAAATTTAGATATTTTGGTCCCCTATTGGTTCACACTAACAAAGTACATTTGGATAAGCACGTCTGCGAAATCTGCGGGCAGGGGGTCGTCGAAGACGAAGATGACACCTACGTCAGCGCAGTCATGGAAAAGATGTCGGAATTACAGAAGAAAGAAGATCTTGTAACACTTATGTCGTCAATCATAGAAAACTCAACAGCAGTGCCTTTCCGATGGCATTGCAGCAAATTCGCTTGCTTTTTCTGCTGTTTTCCTTTCGAAGAGAGTTCAAAACTAAAGTCCCATTACTACGAAGAACACAGCGACGCTAAAATACGAAGCACTTTCCGATCTGTCATCAAAAACAGCAAGGTTAAACTCGAAATTTCGAACCTAACATGCAAGAAATGCTCGAAATCATTCACAGTCCTTAACGATTTTATAGATCATCTTGTCAAAATTCATTCCTTTAAGCTCAATCTGGAAATGAAGCATCAGATCTTTGCCTACAAACTTTCAGACGAGAACATGCAGTGTTTACAATGTGGAGATGAGTTTAGATTCTTCGGAACTCTACTTAAACATACACACGCAAAACATAACACAACGAACGAGGCGTTCTTATGCGAAATTTGCGGGCAGGCCTTCGTAACTAAGACAAGCGTAGCAAGCCATGTAAAATCAGTCCATTCTCAAGACAATGCTACCTGCGATAAATGCAACATCGCTTTCAAAAACGCGAACGCCTTACAGTTGCATCACAGACGGACCCATCGAACCTACATGCTACAATGCCCCAAATGCCCAGAAGTTCTAACCAGCCCGTATCTACGCAAACGGCATCTAGCAAAAGTCCACGATGTAAAACGCTTCCAATACGAATGCGACTTATGCAATTTCGTCTTCACCCTCAAAAGTAGGCTGATTTCACACAAATCCAGGGTCCACATGAAAGAACGTAGCTACAGCTGTGACTTCTGCGCATACAAGGCGTTCAACAAAGAAAGTTTGACGCGTCATATGGTCTCCCATGACGATTCCAGACCATTCCCATGTGAGTTTTGCAAGAAAGCTTTCCAGAGGAAGAAAACTCTAGAGTTACATAGAAGAATACACACTAATGATAGGCGGTACATCTGCCGGGAGTGCAACAAAGCCTTCGTGCAATACACAAGTTTGAAGCTACATTATAGAGTCCATCATTCGAAAGAGCCGTCTGGTTTGGAAGGACAGTGGCCGCGACATTGA
- Protein Sequence
- MPFRRVYVTRPTLRATGTSPRHRRYKAKHGRISSVVSSARNGQPLDVALENEQQLATLLITIIQNSTIIPFRWYHGKFMCFHCPTKLSSTQELREHNLCGHSEINITEIITKFVYNDRRIKLDTGYAKCSQCDEEIYDISDFIDHLSNIHNIVYDPDIARHFISFRLSDDEMSCLECDEKFRYFGPLLVHTNKVHLDKHVCEICGQGVVEDEDDTYVSAVMEKMSELQKKEDLVTLMSSIIENSTAVPFRWHCSKFACFFCCFPFEESSKLKSHYYEEHSDAKIRSTFRSVIKNSKVKLEISNLTCKKCSKSFTVLNDFIDHLVKIHSFKLNLEMKHQIFAYKLSDENMQCLQCGDEFRFFGTLLKHTHAKHNTTNEAFLCEICGQAFVTKTSVASHVKSVHSQDNATCDKCNIAFKNANALQLHHRRTHRTYMLQCPKCPEVLTSPYLRKRHLAKVHDVKRFQYECDLCNFVFTLKSRLISHKSRVHMKERSYSCDFCAYKAFNKESLTRHMVSHDDSRPFPCEFCKKAFQRKKTLELHRRIHTNDRRYICRECNKAFVQYTSLKLHYRVHHSKEPSGLEGQWPRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -