Etri030719.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:2933500-2943983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.79 67 5.1 1.5 5 23 4 23 1 23 0.89 2 21 0.93 79 4.9 0.0 2 23 48 70 47 70 0.95 3 21 0.054 4.6 8.8 0.0 1 23 92 114 92 114 0.96 4 21 0.00018 0.015 16.6 0.4 2 21 119 138 118 139 0.93 5 21 0.023 2 9.9 0.3 5 23 209 228 206 228 0.91 6 21 2.3 2e+02 3.7 0.2 2 23 253 275 252 275 0.94 7 21 2.7 2.3e+02 3.4 0.4 2 23 298 319 297 319 0.93 8 21 0.0018 0.15 13.5 0.1 1 21 323 343 323 344 0.95 9 21 0.45 38 5.9 0.6 1 23 375 397 375 397 0.96 10 21 0.26 22 6.7 0.1 2 23 426 448 425 448 0.93 11 21 0.022 1.9 10.0 0.7 3 23 475 495 473 495 0.96 12 21 0.0077 0.65 11.5 0.4 1 23 499 522 499 522 0.95 13 21 0.14 12 7.5 1.0 3 22 528 547 527 547 0.95 14 21 0.0013 0.11 13.9 0.4 1 21 554 574 554 575 0.93 15 21 0.35 30 6.2 0.8 3 23 605 625 603 625 0.93 16 21 0.091 7.7 8.1 0.6 2 23 654 676 653 676 0.93 17 21 0.024 2.1 9.9 0.5 3 23 703 723 701 723 0.96 18 21 0.34 29 6.3 1.4 1 23 727 750 727 750 0.86 19 21 0.12 10 7.7 2.9 1 22 754 775 754 775 0.96 20 21 0.013 1.1 10.7 0.6 1 23 782 805 782 805 0.97 21 21 0.0014 0.12 13.8 4.2 1 23 812 835 812 835 0.95
Sequence Information
- Coding Sequence
- ATGTGCATATTCTGCTCTGAGTGTTTCCCCGAAGCAGCTTCGTTCAGGCATCACATGACCGAAGAACACGAGAACTTCGATATAAAGCTCGCATTTGCGCATGTTACTTGCGGTCTACTAAAAGTAGATATCACAGAACTGAGTTGTCGAATATGCTCGTCGCCCTTCGATAACCTCGAAGATATAGCTGATCATCTCATTACTGTGcattctaaaaatatatatcttgaCTACGGTCTAGGATTGCAACCATATTACTTTGAAAATGAACAGTTTATATGTGCCATATGCAAAGAGAAAACTCCTTCCCTTGTCGCATTGAGCAGACACACTGCGATTCATTATAAAAGTTGTATTTGCGAGCAATGCGGGAAGGCTTTTGCTTCGAGTGGATCTCTGAGGTATCATGTAAGAAACGCGTGCACTAAAGATGGTCAGGCTCGATGTAGGAAATGCAAAAAGGTCATCCGTTCAATGAAGGAGCATTTAAAAGAATCATTGTTGTGCAGGCCGTACATCTGTGAAATTAATCCGCTGACCATCGCCAGAAAGAACGCACGCACAATTATTGAACATTCAACTGCATACCCATTTAGACTCCCAGAAAGCTTGATGATGTGCATTTTGTGCAGGGAGACTTTCCCCAACGCATCACAATTCAGGCTTCACATGTCCAATGAACACGAGACCTATCGTATACAAATGGCTTTCCAACACGTCTCAGACGGACAAATGAAAGTTGACATCACGGAACTAAAGTGTCGATTATGCTCTTCGCAGTTCAATAACCTCCAACAAATAGCAGATCACTTGATCATGGCTCATTCTAAAACGATAGATCTAGACAACGATCTAGGGTTGCAGCCCTATCACTTAGAAAATGAAAAGTTGTCTTGCGCGGTGTGTCAACACAAGAGTCCTAATATGGTCGCGTTAAGCCGACATACTGGATCgcattttaaaagttttatctgcGAACATTGCGGAAATGCTTACGCTACAAATGGGTCTCTGATGTATCATCTAAGAAATTCTTGTTCCAAAGATGAACTCGCGAGAAGGAATGCTGAGATCGTGTTAAAGTATTCGTCAGTGTACCCGTTCAGATTGCAAGGAAAAATCTTTATATGTGTATACTGCTGCGAAGAATTTACAAGTGCCGATGAAAACAGAATCCATTTAGACTCTCATACGAAAGTAAACGTGTCCTCTGCCTTCGGCCACCTCGGAGGGGCTAGATGTAGAGAATACCTCAAAGTTGACTGCGTCAACCTCAAATGCAGGCTGTGCAATGAGCCGTTCGATGACCTCCCTGATATAGCTCAACATCTCAAATTTGAACATGAGGATGTAGCGCATAGTCTTAACTTAGACAGCGAATTAGGGCTGCATCCCTATAGATTGTTGAAAGACAAATGGAACTGCATGGTGTGTCACCAGAAGCTGCCGAGCTTAGTCACGCTTGTGAGGCACATGTCGACTCATTACGCAGACTATTTTTGTGATATCTGCGGTAAAGGCTATCTGAACCTCCAGAACCTGAATTTACACGTAAAATACAGTCACTCAGCGAAAAACATCTGCAGGAAATGCAAGAAAGAATTCCCTACACTAAATGAAAAGAAGGAACACCAAAAAACATCTAGGAAATGCATGCAGTTTGCCTGTGTCCATTGCGGGGAGAGATTCTCCTCTTGGGAGATGAAGATTAAACATATGACAAAACTCAGGGCAATCGCGAAAAGGAATGCTGAGATCGTGTTAAGGTATTCGACAGTGTTACCGTTCAGGTTGCAAGCACAAAATTTGATATGTGTTTATTGCTGCGAAGCATTTGACGATTCCGACGAGTACAGGCGGCATTTTGACTCGCATCCTAATGTAAACGTGCGTACTGGCTTCGCGCATCTCAGAGGCACAACAGGTAGAGAATATCTCAAAGTTGACTGCGTCAACCTCAAATGCAGGCTGTGCAATGAGCCGTTCGATGACCTCCATGATATAGCTCAACATCTCAAATTTGAACATGAGGATGTGGCGCGTAGCCTTAACTTAGACAGCGAATTAGGGTTGCATCCCTATAGATTGTTGAAAGACAAATGGGCCTGTATGATGTGTCACCAGAAGCTGCCCAGTTTAGTAACGCTTGTGAGGCACATGTCGACTCATTACTCAGACCATTTTTGCGATATCTGCGGTAAAGGCTTTCTGAACCTCCCTAATAAGCTTCGGCACGTCAAATTCAGCCACTCGGCGAAGCATAAGTGCAGGAAATGCAGGAAAGAATTCCCTACACTTAACGAAAAGAAGGAACACCAAAAAACATCTACGAAATGCTTGCAGTATGTCTGTGTCTATTGCGAGGATAGATTCTCCTCGTGGGATATGAAGATTAAACATATGTCTAGCAAGCATGATGTTGATGCGCCTAAGTACCCTTGCACCGATTGCAAGATCGTCTTCTCCAACCGGAAAAGTTTCTATAGGCATTATCATAACACACACACACTGATGCACTAG
- Protein Sequence
- MCIFCSECFPEAASFRHHMTEEHENFDIKLAFAHVTCGLLKVDITELSCRICSSPFDNLEDIADHLITVHSKNIYLDYGLGLQPYYFENEQFICAICKEKTPSLVALSRHTAIHYKSCICEQCGKAFASSGSLRYHVRNACTKDGQARCRKCKKVIRSMKEHLKESLLCRPYICEINPLTIARKNARTIIEHSTAYPFRLPESLMMCILCRETFPNASQFRLHMSNEHETYRIQMAFQHVSDGQMKVDITELKCRLCSSQFNNLQQIADHLIMAHSKTIDLDNDLGLQPYHLENEKLSCAVCQHKSPNMVALSRHTGSHFKSFICEHCGNAYATNGSLMYHLRNSCSKDELARRNAEIVLKYSSVYPFRLQGKIFICVYCCEEFTSADENRIHLDSHTKVNVSSAFGHLGGARCREYLKVDCVNLKCRLCNEPFDDLPDIAQHLKFEHEDVAHSLNLDSELGLHPYRLLKDKWNCMVCHQKLPSLVTLVRHMSTHYADYFCDICGKGYLNLQNLNLHVKYSHSAKNICRKCKKEFPTLNEKKEHQKTSRKCMQFACVHCGERFSSWEMKIKHMTKLRAIAKRNAEIVLRYSTVLPFRLQAQNLICVYCCEAFDDSDEYRRHFDSHPNVNVRTGFAHLRGTTGREYLKVDCVNLKCRLCNEPFDDLHDIAQHLKFEHEDVARSLNLDSELGLHPYRLLKDKWACMMCHQKLPSLVTLVRHMSTHYSDHFCDICGKGFLNLPNKLRHVKFSHSAKHKCRKCRKEFPTLNEKKEHQKTSTKCLQYVCVYCEDRFSSWDMKIKHMSSKHDVDAPKYPCTDCKIVFSNRKSFYRHYHNTHTLMH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -