Etri018152.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- ZIPIC
- Assembly
- GCA_955876795.1
- Location
- OY041612.1:15983098-15984465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00026 0.022 16.1 0.1 2 23 144 165 143 165 0.96 2 11 7.4e-05 0.0063 17.8 1.0 1 23 171 194 171 194 0.96 3 11 1.9e-06 0.00017 22.8 0.2 1 23 202 224 202 224 0.98 4 11 0.00015 0.013 16.8 0.9 1 23 230 252 230 252 0.99 5 11 0.00058 0.05 15.0 2.8 1 23 258 280 258 280 0.95 6 11 3.9e-06 0.00033 21.8 1.9 1 23 286 308 286 308 0.98 7 11 6.3e-06 0.00054 21.2 2.2 1 23 314 337 314 337 0.97 8 11 0.99 84 4.8 1.1 5 19 343 357 341 361 0.93 9 11 0.19 16 7.1 1.2 2 23 368 390 367 390 0.93 10 11 0.12 10 7.7 0.2 1 23 396 421 396 421 0.96 11 11 0.00027 0.023 16.0 0.6 1 23 427 450 427 450 0.92
Sequence Information
- Coding Sequence
- ATGGATTATAAACTGTGTCGTCTATGCTATGAAAGAGAAGCTGCTATAAGCATATTCCAAAGTGGAACTGCCGAGCAAGCCGTTATTAAGATATTGTACTGTTGTAAATCTGTAAAGATACAAGAGAACGATGGCTTACCAGGGAACATTTGCAACGTCTGCGACCGGAACCTCGACACCTGTTACCAGTTCTTGCAACAGTGCGAGGACTCAGATAAGAAACTGCGATTACTTAATAGTGAGTCACCATGTCGCAGTGAGGAGTACATCACCAAAACAGAGGTCAAGAACGAAGACTTTATCAATGACTACGAGAGGCACAACTCAGATGAAATCCAACTATCCCCCCTGGACTTAAAAGCAGACGCATTTCAATTCAACGCCAGAAAACCGCGACAGAAAcgaataaaatacctaaaggaAGATCTAAACTGTGCAGTGTGCAGTCGAGCGTGCGCCAGCGCCTCCGCGCTCGCCGCGCACCTGCGCACGCACTCCGGAGACAAGCCCTTCCAGTGCGCCGCCTGCGACAAGCGGTACAAGGACAGCGGCACGCTGAAGAGGCACACCGAGAGAAACCATCTTGCACATCGAGAAAGGAGGTTCATCTGCGAGAACTGCGGGAAAGGATTCTACTCCAAAAGCGACATAATGATCCACATGAGAGTCCACACTGGTGAAACTCCATACGTATGTCCCGTCTGTCAGTCCAGGTTCACCCAGATGAGCGCCATGCTGAGGCACAAGCGACGGCACGCGGAGGAGAAGACGCATGCGTGCGCCACGTGTGGCAAGTCCTTCTGGACCAAGGAGGAGCTGAAGAAGCACCACAGTGTGCACGACGATGTGCGCCACTTCCAGTGTTCACTCTGCAACACGCAATTCAAGCAGAAGAGCAACATCAAGAAGCATATGGCCATCCACATCAACCCCAATAGATATATCTGCAACCACTGCGGGAATACATTCAATGTCAAAGGAAACCTTAAATCACACATTAACAGGAAGCATTCCGAGAAGTCAGGCTACTGCACAATCTGCTGCAAGAATGTGTCCAACTTGGAGAACCACTCGTGGAAGCACACGGGGCAGAGGCCCCTGAAGTGTGAGTTCTGTCCAAGCAGCTTCTGTGAAATGAGAGCTTTGGCTCTGCACATCAACTTCAAGCACAAAAAAACTGAGAGGTTCAAGTGCAGCATGGAAGGCTGCACCCTCGGTTTTCCATCCAAACCTATGATGATGTACCACATTGCCAGGTTCCATGACAGGCAGACCACATACCCATGTGACCGCTGCCCGAGAGGATTTTACAGGAAGAATGACTTATCCAGGCATAAAATAGGCACTCACAAAGAAAGACTGCTGTAG
- Protein Sequence
- MDYKLCRLCYEREAAISIFQSGTAEQAVIKILYCCKSVKIQENDGLPGNICNVCDRNLDTCYQFLQQCEDSDKKLRLLNSESPCRSEEYITKTEVKNEDFINDYERHNSDEIQLSPLDLKADAFQFNARKPRQKRIKYLKEDLNCAVCSRACASASALAAHLRTHSGDKPFQCAACDKRYKDSGTLKRHTERNHLAHRERRFICENCGKGFYSKSDIMIHMRVHTGETPYVCPVCQSRFTQMSAMLRHKRRHAEEKTHACATCGKSFWTKEELKKHHSVHDDVRHFQCSLCNTQFKQKSNIKKHMAIHINPNRYICNHCGNTFNVKGNLKSHINRKHSEKSGYCTICCKNVSNLENHSWKHTGQRPLKCEFCPSSFCEMRALALHINFKHKKTERFKCSMEGCTLGFPSKPMMMYHIARFHDRQTTYPCDRCPRGFYRKNDLSRHKIGTHKERLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698540;
- 90% Identity
- -
- 80% Identity
- -