Etri030716.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041629.1:2922868-2929388[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.86 73 5.0 0.1 3 22 289 308 287 310 0.85 2 19 0.087 7.4 8.1 0.1 2 23 381 402 380 402 0.94 3 19 0.0025 0.21 13.0 0.2 3 23 408 429 406 429 0.96 4 19 0.9 76 4.9 0.1 5 21 437 453 435 454 0.91 5 19 0.00018 0.015 16.6 0.2 2 23 462 484 462 484 0.91 6 19 0.048 4.1 8.9 2.7 1 23 491 514 491 514 0.94 7 19 6.9e-06 0.00059 21.0 3.9 1 23 518 540 518 540 0.99 8 19 0.64 55 5.4 0.9 2 23 885 906 884 906 0.91 9 19 0.00018 0.016 16.5 0.3 3 23 912 933 910 933 0.96 10 19 1.3 1.1e+02 4.5 0.1 5 21 941 957 939 958 0.91 11 19 1.5 1.3e+02 4.2 0.1 2 23 1045 1067 1044 1067 0.96 12 19 0.069 5.9 8.4 2.4 2 23 1088 1109 1087 1109 0.94 13 19 2.1e-05 0.0018 19.5 0.4 1 23 1113 1136 1113 1136 0.97 14 19 0.012 1 10.8 2.4 1 21 1143 1163 1143 1164 0.94 15 19 0.0081 0.69 11.4 0.4 1 23 1171 1194 1171 1194 0.94 16 19 0.039 3.3 9.2 3.9 1 23 1201 1224 1201 1224 0.92 17 19 0.018 1.5 10.3 1.3 1 23 1229 1251 1229 1251 0.95 18 19 1.2e-05 0.001 20.3 1.3 1 20 1257 1276 1257 1279 0.95 19 19 0.0003 0.025 15.9 4.2 1 23 1285 1308 1285 1308 0.98
Sequence Information
- Coding Sequence
- ATGCAACAACCCGAGTCTCTTCAAGATGAAGAATGGACGACCGCAGAGGTGAAGATAGAGATTCCTGTTGAATTTGAAAATACCATTGATGCTAGTAATGAATGGATTACAACAGATTCAGTGGATCTAGGCAATACGGACGTCTCTAAAGCCAAACACTCGCACGATTATAAAACCGTACCTGACGAATGGGTTGCACTCCCGATTAATGCTGCAGAAAACCTTCCGCCTTTAAAACCAAATATTTGCCTAGACGAGGATGGTAATGAGTGGGTAATTACTGATACGGTAAAAGATACAGACACTGTCCAAAATAGCCCCGAATCCAATAACTCAAGAACTACGACACgccaacaaaataaacaaagatatCGTTTCCTTTCTGATCCTGCGCCAAACGTTTCAAGAGTCAACAAGCCCGATTCTAATTTGACACCAACTATGAGtctcaaagaaaataacatggAAGGATATCGATTCGTCTCAGAACTTGCTCCAAAGGTTTCAAGAATTGATGAGCCCGCTTCTAAATTGACTCGGACATGGAAACAAGATATCATAAAAGGATATCGGTTCGTCTCAGACCCTGTGGCAAGCGTTTCAAGACTTGATGAGTCAGCTTCTAAATTGACTCGAACTTGGAAACAAGAAATTGTTAAAGGATATCGGTTTGTCTCAGACCCCGCGGCAAGCGCAAGACTTGACAAGCCCGCTTCTGGTGAAATGTTGCTCAAGACGTCTAAAAGACCTAGAAGGTTGCTAGATATTACGACCCTTAGCATAGCAGATCAAAATGCTGTGCTCTTACTTCGTAACACTACAGCAGTTCCTTATAGAATAGAGAACGTTAGATCGATCATTCCATGCTTTGCTTGTGGTCGCAAATTTATTGACCCTTTACTATTCAGAGACCATTTCATTGCCGAGCATCAATCGGTGGACAAGGCTAATGGCCTTTACGGTAAACACAGGATCCAGACGCGGGTCGATATAACGGACCTAAGCTGCCTCTTATGTACGCAACCGCTTGATAATTTAGACGAAGCTGCGGCACATCTTGTCCAGATGCACAAAATAGGGATCGATCTGAACGAGAAGCTCGGTCTGGTGCCGCTCAAGTTCCCAGAAAAGGGACTGTGGGAATGCGCAGTCTGCGGGATTAAGTTTAGTGCATTCAGAGAACTGTACAGGCACTCTGGCACACATTTCGCGAGCCAGATCTGTGAGGTGTGTGGCATGCGATTTGAGGCACAGTATACATTAAATTTGCATGTAAAAACAAAGCATGTTAAGGGACGGCTATGTATTAAGTGCAAAGCTATATTCCCTACCAGCGAGGAGCTAAGGCAACACGTAAAGGAAGAACGGTCTTGCAGTAATGGTTATTGCAAAATTTGTGATAAAGCCTTCGGGTATTGGCAATCATTGCAGAAGCACAGAGAAGCTGTACACGGTTTTGAAAAAAGGATTTATACATGCTCTGTGTGTCAAAAAGTGTTCGAGAAGCGTATGCAGATGTATTTGCATTTCAAACAGAAGCATACAGATTCTTACAAGTGTAAAATATGTAACAAAAAGGTTTGTGGGTCTTCAGGTTTGAAGAAACATATGAGAACGCACAGTGATGAAGAATGGACGACCACAGATGTGAAGATAGCGATTCCTGTTGAATTCGAAACAAGCATTGACGCTACTAATGAATGGATCACAACCGATTCAGCGGATCTAGCCAATACGGACGTCTCTAAAGTTAAACAAGGATATTGTAAAACTGAAGATGACGAATGGGTTATACTACCGCATAATGCTGCTAAACATCCTTCACCTGTTAAACCGTGCCTAGACGACGGCCCCGAGTGGGTAATCACTGATACCGTAAAGGATACAGATTATACAGTTAAGACTAATCTCGATTCTAAAAAGTTTCGACCAAAAAGGCGCAGTAgacaacaacaaaacaacatGGAAGGATATCAATTCGTCTCAAAAACTATGCTAAAAGTTACGAGAGTTGGCAATTCCGCTTCTCAATTAATACAAACTCAACAAAACAATATGGAAGGATATCAATTCGTCTCTAAACCTGTCCTAAAAGTTTCGAGTGTTAACAATCCAGCTTCTAAATTAGTTCGAACTAGGAGACAGCAACAAAACAACATAAAAGGATATCAATTTTTCTCAAAACCTGCACAAAATGCTGTAAGAGTTGAACAGCTTAAAAAGGACGGCGATCGTATCAAAGGAGTTGATGAAATGTGGCTTAAGGTGCCCAAAAGTCCAAAGGCGTTGTTGGATACTACGGATAAAAACGCCGTGCTCTTACTTCGTCACACTACAGCAATCCCTTATAAAATGGAGAACCTGAAATCGACCATTCCATGCTTTGCTTGCGGGCAGAAATTTCTTGATCCTTTTCTATTCAGAGATCATGTCATTGCAGAGCACCCATCGGTTGACAAAGTTATTGGCTTTAACAGTAAAATTATCAAAACGCGGGCCGATATAACGGACCTAAGCTGTCTCATATGTACGCAAGCGCTTGATAATTTAGATAAAGCGGCGGCACATCTTGTCAATGAGCATCAAATAGAGATCGATCTAAGGGAGAAGCTTGGTTTGGTGCCGCTCAAATTCCCAGAAAGAGGACTCTGTCAATGCGCTGTCTGCGGTCTAAAGGTTGTTACGTTCAGAGAACTGTACAGGCACTCTGGCTCACATTTCTCGTACCAGATCTGCGAGGTGTGTGGCATGCGATTTGAGACACCGAATTCTTTAAAATTGCATGTAAAAACAAAGCATATTGAGGGACGGTTATGTATTAAGTGCAAAGTGGTATTCCCTTCCAGTAAGGAGCTGAGCCAACACGTTAAGGAAGTACGCTCTTGCAATCCAGaatCGAAATACCCGAATGCGTCTGCAGCAAAGCGCAACGCCGAGTTAATAGTGAAACACGCCACAGTGTACCCATTCAGGCTTCCTGAGAACTGTATGGTCTGTGTGTTTTGCTGTGAGGATTTCGAAAACTGCGCTACCTTTCGCAGCCACATGGAGCAAGAGCATTCGGCTTTCCCGGTTAAAATGGCCTTCTCGCATTGCTCCGAAGGCTTCGTAAAAACCGACTGCTCTGATATCCGATGCCGAATCTGCTCTGAACAAAGCGATACTCTTGAGGATATAGCTGTGCACCTGCGAAAAGACCACGACAAACCCATCCAGCTGTCAGAACCTTTAGGATTACAACCATTTAAACCTGATAAGCTAACGTGCGTGCTTTGCGGAGCGAAATGCTTCAGCCTCAGGCAGCTCAGTAGACACACGCAAACACACTTCCTCAGGTTCACATGCGAGTCCTGCGGCAAGTCGTACGCCACAAACACAGCTTTACAAGTACACATAAAATATACACATTTGATGAAAAAGGAACAGTATTGCTGTAGGAAATGTAGGAAGATGTTTAGCTCGCAGGATGAAAGAAGAAATCATATACTGGAAACGAAGAAATGTTGGCCGTATTTGTGCCACATGTGCGGCGAAAGATATGTGTCTTGGAACGCTAAACAGGCGCATTTGAAGGAAGTCCACGGCTTGGAAGACGGCCCACACACCTGCCCTGAGTGTGGCAAGATTTTCACAGAAAAGAAAGCTTGCAAAGAACACTTTAAAATTACACACACGGACGATAATTTTGTATGTTCCTTTTGTGGTATGAAGTTCACTGCCAAAAATCATTACGATGAGCACATGGTCGGTCATACGAAAGAGAAACCCTATACATGTTCGGTTTGCTACAAATCATTCGCGAGGAAGAAGAATCTAACGCAGCACATGTGGATTCATAGCGAATACAAGAGATTTGAATGCAAGATATGCAACAAAAAGTTTAATCAGAAAGTCTGTCTGGTGTCGCACAATAGAACAAATCATCCCGAGTTAACGCAGTTTGAGGAACAAAATTCCGGGGTCAAATATTTACTGTCGGTTCTAAAAAAGTGA
- Protein Sequence
- MQQPESLQDEEWTTAEVKIEIPVEFENTIDASNEWITTDSVDLGNTDVSKAKHSHDYKTVPDEWVALPINAAENLPPLKPNICLDEDGNEWVITDTVKDTDTVQNSPESNNSRTTTRQQNKQRYRFLSDPAPNVSRVNKPDSNLTPTMSLKENNMEGYRFVSELAPKVSRIDEPASKLTRTWKQDIIKGYRFVSDPVASVSRLDESASKLTRTWKQEIVKGYRFVSDPAASARLDKPASGEMLLKTSKRPRRLLDITTLSIADQNAVLLLRNTTAVPYRIENVRSIIPCFACGRKFIDPLLFRDHFIAEHQSVDKANGLYGKHRIQTRVDITDLSCLLCTQPLDNLDEAAAHLVQMHKIGIDLNEKLGLVPLKFPEKGLWECAVCGIKFSAFRELYRHSGTHFASQICEVCGMRFEAQYTLNLHVKTKHVKGRLCIKCKAIFPTSEELRQHVKEERSCSNGYCKICDKAFGYWQSLQKHREAVHGFEKRIYTCSVCQKVFEKRMQMYLHFKQKHTDSYKCKICNKKVCGSSGLKKHMRTHSDEEWTTTDVKIAIPVEFETSIDATNEWITTDSADLANTDVSKVKQGYCKTEDDEWVILPHNAAKHPSPVKPCLDDGPEWVITDTVKDTDYTVKTNLDSKKFRPKRRSRQQQNNMEGYQFVSKTMLKVTRVGNSASQLIQTQQNNMEGYQFVSKPVLKVSSVNNPASKLVRTRRQQQNNIKGYQFFSKPAQNAVRVEQLKKDGDRIKGVDEMWLKVPKSPKALLDTTDKNAVLLLRHTTAIPYKMENLKSTIPCFACGQKFLDPFLFRDHVIAEHPSVDKVIGFNSKIIKTRADITDLSCLICTQALDNLDKAAAHLVNEHQIEIDLREKLGLVPLKFPERGLCQCAVCGLKVVTFRELYRHSGSHFSYQICEVCGMRFETPNSLKLHVKTKHIEGRLCIKCKVVFPSSKELSQHVKEVRSCNPESKYPNASAAKRNAELIVKHATVYPFRLPENCMVCVFCCEDFENCATFRSHMEQEHSAFPVKMAFSHCSEGFVKTDCSDIRCRICSEQSDTLEDIAVHLRKDHDKPIQLSEPLGLQPFKPDKLTCVLCGAKCFSLRQLSRHTQTHFLRFTCESCGKSYATNTALQVHIKYTHLMKKEQYCCRKCRKMFSSQDERRNHILETKKCWPYLCHMCGERYVSWNAKQAHLKEVHGLEDGPHTCPECGKIFTEKKACKEHFKITHTDDNFVCSFCGMKFTAKNHYDEHMVGHTKEKPYTCSVCYKSFARKKNLTQHMWIHSEYKRFECKICNKKFNQKVCLVSHNRTNHPELTQFEEQNSGVKYLLSVLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -