Etri027602.1
Basic Information
- Insect
- Eupithecia tripunctaria
- Gene Symbol
- -
- Assembly
- GCA_955876795.1
- Location
- OY041623.1:8171509-8178919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 2.2 9.8 0.5 5 23 100 118 99 118 0.96 2 12 0.046 3.9 9.0 0.2 3 23 126 146 124 146 0.90 3 12 0.27 23 6.6 0.4 2 23 154 175 153 175 0.92 4 12 8.3e-08 7e-06 27.1 0.9 2 23 181 202 181 202 0.98 5 12 0.00021 0.018 16.3 2.5 1 23 208 230 208 230 0.98 6 12 7.1e-05 0.006 17.9 0.1 2 20 239 257 238 259 0.93 7 12 0.00064 0.055 14.8 0.2 1 23 294 317 294 317 0.95 8 12 0.0021 0.18 13.2 0.0 3 23 326 346 325 346 0.98 9 12 0.00019 0.016 16.5 0.6 1 23 356 378 356 378 0.98 10 12 2e-05 0.0017 19.6 4.5 1 23 384 406 384 406 0.98 11 12 0.0021 0.17 13.3 0.3 3 23 414 434 412 434 0.98 12 12 0.00014 0.012 16.9 0.8 1 23 440 463 440 463 0.96
Sequence Information
- Coding Sequence
- ATGCTTCCAGAAGTATGGACCTActcCATCATCACTGATGACCAGAACCTGATAAAGATACTAACTAGTCAAGAATTTATTGAAGATGGCTCAGGAACTGTGTTTCTAAAACATGATGGAGTGAACTATATTGCAGATGGACAACTGGTGAATGATGATGACGAACAAGATGAAGAAGTTATATATTACGAAGGTGATGGAGAATCACAGTTCCAAATTGTGAAGTATGATGGTTCCGAGTTAGTCATAGAGTATGCTGATGAAAGTAATCAAGCGGTCACACCGAATTTCCTCTGTGACTGCGGAGAACAGTACACAGACTACAATGAATTTGAGAAACATCAGACAAAACACAATCCGGCGGGGGACCACCTCTGCAACTTATGTGGCAAGGGGTTTGAGTCAGAAGAAATTCTAACTGGCCACATGGTCTTACACAATGTCTCGGGGTTGCTACTCCAGTGCCCATTCTGTGAAGCAGTCATTAAGAGAAGTGCTTTGACACAGCATATCAAGCATGCTCATAACCACGTTAAACCACAGTGCAATGTTTGCAAAAAAACATTTGCCAATCCCAACAATTTGAAGCGACACATGATGATCCACAATGGAGTAAAGGAATTTGAATGTGATCTCTGCTTCAAAAGGTTCAGCCAGAAAATAACCATGCAGACTCATAGACTGACTCATCTTAACCCTATCCAACCAACTCTAACCTGCCCTGGGTGTGAAGTCACCTTCAAAACCAAAGATCTGCTCACACAGCACATTGAAAACAGTGAATGTCCCAAGTCCAAAGTGTTAGATTCAGGTGCAAAGGATGAACTGATGAAAGCTGTCAAAAAGGAGGTCAAGACTAGCCTTGGTAAGCTCTTAGGCTTTGCCTGCTCTTTGTGCAAAAGGATGTTCTCCATAGAATCAGCTTTGGAATCCCATATTGAGTCAACTCACATCGTTGATCCGGCTGAGCTTCTCTGCTCCGAATGTGGAGAAGTTGTGAGTTCCAAGAAAGAGATGGCAGCTCATGTGATGAGCCATGACAAACGCAAGAACATTGTAAAGAGGTTTGAATGCTCGTCTTGCGGTAAGGGCTGTTCCAGCCAGGCAATGCTGCTGATGCATGAGAGAGTCCACACAAATGAGAGGCCATACTCCTGCCAGCTGTGTCCTCtgaaatttaaaactaaaactcaccTACGGACTCATCAATTGACTCATACTCGTGAGAAGAAGTTCGGTTGCTCTGTTTGCATGAAGTTTTTTGCTCTGAAAGGAAATCTGGTGGTACATTTAAGGACGCACACTGGTGAAAGGCCTTATGTGTGCAGTGACTGTGGCGACGCCTTTATTGATTCCAAGTATTTGAAGAAGCATAAGCTGAAGAAACATGGCTCTGACACTGTGCCTTGGAATCCGTTCTTGAAAGTAAAATATGAAGATATGGATGAATCATAG
- Protein Sequence
- MLPEVWTYSIITDDQNLIKILTSQEFIEDGSGTVFLKHDGVNYIADGQLVNDDDEQDEEVIYYEGDGESQFQIVKYDGSELVIEYADESNQAVTPNFLCDCGEQYTDYNEFEKHQTKHNPAGDHLCNLCGKGFESEEILTGHMVLHNVSGLLLQCPFCEAVIKRSALTQHIKHAHNHVKPQCNVCKKTFANPNNLKRHMMIHNGVKEFECDLCFKRFSQKITMQTHRLTHLNPIQPTLTCPGCEVTFKTKDLLTQHIENSECPKSKVLDSGAKDELMKAVKKEVKTSLGKLLGFACSLCKRMFSIESALESHIESTHIVDPAELLCSECGEVVSSKKEMAAHVMSHDKRKNIVKRFECSSCGKGCSSQAMLLMHERVHTNERPYSCQLCPLKFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSDCGDAFIDSKYLKKHKLKKHGSDTVPWNPFLKVKYEDMDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -