Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 7.7e-13 5.9e-10 39.9 3.5 3 44 82 122 80 122 0.96

2 3 1.3e-09 9.6e-07 29.6 6.0 3 43 185 224 183 229 0.92

3 3 0.00025 0.19 12.7 0.1 3 43 234 274 232 275 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	7.7e-13	5.9e-10	39.9	3.5	3	44	82	122	80	122	0.96
2	3	1.3e-09	9.6e-07	29.6	6.0	3	43	185	224	183	229	0.92
3	3	0.00025	0.19	12.7	0.1	3	43	234	274	232	275	0.83

Coding Sequence: ATGTCGGTCGAACTTGGACGTAAGATGTCACCCAAAGCTTTACATATTGCATATAATCGCTATATAAAGTCATATGAAACTCCATTTGAAACTGTGGATATACCGGTCCAGGAAGTATCCCCGGAAGCGGAAACCGACGACGTGCTCAACATGCAGTACGTCATGCTGGATACTAACACCAAGCGGAAGTATGCCAGGAAATCTACCGGGAACACGATTGGAGAGCAACGCAAACGCAGCTGGATCTGGAAATACTTCGACAAGCTGAGCAACATAATCTACCGCTGCAACATCTGCAACGTCGTGCTATCCATCAAGGGCTGCAACACCAACAACTTGAATCGACACATGCGCTCCCGTCACCCGGATAGCTACACGAGCGAGAAGATGGGCGAGATTACCGCTAAGCAGGTGCAGAATATCGGTGAAATAATCACCGGCGACGACGGCGACACGCCAGTGGCAATGAACACCGAAGAGATTTATGGAGGCATCAAGGATGTCAGTCtaatagAAAGCTCCCCCTCGTCTCAGAAGATGCGTCGCAGCTGGATCTGGTCTTACTTCGACCATGTGTCTGCTACTCAGGCTCAATGCAAGCTCTGCCACCGTCAGATCCAGCACGGCGGCAATGCGACCGGCAACATGAACCGCCATCTTAAGATGATACACCACAAAACATCACATGACAGCAACTGGGTTTGGAAAGTATTCGAGAAGGAAGAGGCCAACTACACCTGCAAAATCTGTCAGCAGACGATCACGAGGAACGAATTGGAAGTGGATATGATATCCATCATGTATCATCTCAGGCAAGAGCACGGGGTGGTGTCCGGAGACCAGATCATAACCGGCACTGACGGTGTGGACGAAAACTGA
Protein Sequence: MSVELGRKMSPKALHIAYNRYIKSYETPFETVDIPVQEVSPEAETDDVLNMQYVMLDTNTKRKYARKSTGNTIGEQRKRSWIWKYFDKLSNIIYRCNICNVVLSIKGCNTNNLNRHMRSRHPDSYTSEKMGEITAKQVQNIGEIITGDDGDTPVAMNTEEIYGGIKDVSLIESSPSSQKMRRSWIWSYFDHVSATQAQCKLCHRQIQHGGNATGNMNRHLKMIHHKTSHDSNWVWKVFEKEEANYTCKICQQTITRNELEVDMISIMYHLRQEHGVVSGDQIITGTDGVDEN

Sequence clustering based on sequence similarity using MMseqs2