Esub008764.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438635.1:12497049-12504405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 25 6.5 0.0 2 23 23 45 22 45 0.95 2 13 1 89 4.8 0.2 2 23 53 75 52 75 0.93 3 13 1.1 91 4.7 0.2 3 23 82 102 81 102 0.92 4 13 0.49 42 5.8 2.3 1 23 109 132 109 132 0.95 5 13 0.014 1.2 10.6 0.2 2 21 168 187 167 188 0.93 6 13 0.00056 0.048 15.0 0.5 1 21 194 214 194 215 0.94 7 13 1.5 1.3e+02 4.3 0.4 3 21 232 249 231 250 0.85 8 13 2.3 2e+02 3.7 0.8 2 23 255 277 250 277 0.84 9 13 0.19 16 7.1 0.7 2 23 285 307 285 307 0.97 10 13 0.16 14 7.3 1.8 1 23 316 339 316 339 0.92 11 13 0.00048 0.041 15.3 3.1 1 23 345 368 345 368 0.96 12 13 0.0012 0.099 14.1 5.2 1 23 492 514 492 514 0.98 13 13 0.00049 0.042 15.2 1.0 2 23 521 543 520 543 0.95
Sequence Information
- Coding Sequence
- ATGCCAAATCTACTAGAAGAGCTATCGGCCGATTTCGATCTAGAAGCGGCCTATGTGGCCGATACAACGTGCCCGGTATGCTACGCCGAGTTCTTGGACTCAGAAGACCTTCTTATTCACATAAATCAAGTCCACACGGCTACAATAAGCTCTCAGCCCTGCCAATTATGTCCCACAACTTGCGCGGGCGTTATAGATTACACCAAACACGTAAGGGACGCCCATTTATTAGACTTGAGAGCTTGCAAATACTGTGCCAAAGTATTTCTAAACGGCGGTAAATTGAAGCTACACGAAGCAAGACATTCCTCTAACGATAATCTCTTTTGTTGCTCGCAGTGCAACATTCTATTCCCAAACGTTATTTTGCTGGAACACcacgaaaataaaaatcatgatAATGCTAAAGATGGTGTCATACTAAGTTGTTTGCCACATCTGTCTGAGATATTGTGTCTGAAAGCGAAACTGCTGCTGCAGAGTGTAGGTAAGAAGACATTACAATGTTCAATGTGTGGCTTCTCGTCAACAAACTTAAGAGAATACACGAAACATCTTGAAATGAAGAAATGTGAAACTTTTGTGTGCAGCTTATGCTCTTCTGTGTTCACAAACAAGAAGAATTTACTGAAACATACCCAAGTGACAAAAAAATGTATGGCTCTTAACAAAAGCGATGAGAGAACAATATTGTGCCATGATTGTAACAAATCTGTTCACCCAGATGCTGCCAAAGTACACTTTAAGACTTGCAAAGCCCTGAAATGCATTGAATGTGAGTTCGCCTGCAAGACGGTCGACCAGCTCTCCGAGCATCAAGCTGAGAAGCATCCTCAGGACATGAACCTAAGGAAATGCAATTTTTGTACAAGAGAGTTTATTGGTGATTATCCAATGAAGAAACATGTCAGACGAGTTCACAGATCGACCTTCCACTTGTATAAATACCGGTGTATGGACTGTGAAGCCATTTTCCAGCACCCACAGAAACTCTTTGCACATTTCTTCAGCAATCACAAAAGTCTGTTGCCTTTTCACTGTAAAATCTGCAATAAAAGCTTTCGTGTACGTAAAGCATTTTCTCTCCACATCAAGTTGGAGCATAAAAGCATTGGATTTGTAGAATTCAATGATAAATACCATGTTTACTTCACTGCTGAGAAATCTATCAACCCATTTGTGCCTAAATGTGTGTTATCTCAGGAAGAATTATCGGCCTTCGATTCTGGGACTGAAGATATTGATAAGACAGGAGAACCTCCTACAGATACAGACTTAACAAATGTTGAGACAGAGGATGAAAAAGGAAAACCGAAAGCAAAATCTAAGCagataaaaaccaaaaaacccAAAAAGGCAAATATGGACTCTGTGCTTGTCTACTCTTCCGATGAAGAGCCCTTACAAGAAATCAGAAAAAGAGCAATTAGGGGCAGAAGGATTGGCCGTAGATACAAGAAAGGCAAGGTCCAGTTTGTATGCAAGACTTGTGACAAAAACTGCTACACATACCAAAACTACCTTAACCACATGAACACACACAAAAAAGACCAAGAACTAGAATGTGTTAAATGCTCACAGAAATTTAACTCAAAGAACTCGTTAACTGAACACATGAAAGAAGATCATGCATCGTCCAAATTAACGGAGACATTGAAAAACTTGCTGAAGAAAAAGCAAACAGCTCCAAACGAACCAGCAACGAACAAGGAATCATTCAAAATCATCCTACAAAAAGTCAAAAGTGACCGAACTGAAGTAGCAGCAACAATAAAACCTGTAGAAACTAACCTCTCTGTCAAAAACTTCATAGAGAACTTTACTCCAGACATCACGGACCCTACCCCAAAAGAAACTGTCCCAACAACTTCAACAATCAGCATCAAGCCGTACCTCAGTCCTTTCCACCGAGAACCTTTGATAAAACTCAGAAAGTTCAAAGACGTACCGACCTATGAAGCAGTGCCTCTTAAGATGCCACAGAGGTTTAAGCGGCATGATCAGTTCGTTAAAACTAAGATCAGGATACGTATGGTGAACGCTTTGCAAGAAGTGTTGCCAGAATTGGATCATAATTATACGGACAACTATGACAATGATAGTTACTATGATAGGAACGACATCCCCGACGTGGCTCAAGAAGTCTCTCTGGACTTCACCGAGGAGCCTCTCAAGTACCAGGTGAAAGGACCGCCCCCCAAGATTGTCATACCGAAGATGCCTAAAGGCTACTCCAAAATCCACATGGCGACGCTCCAACCCGACGCGCCTTACTTCAAGATCATCAAGGTGGACTCCGACAACATGACAGAGATCAAGCCGGCCCACTGGACGCCCGCCCTCGGCAGCGAGGTGATCAGCCTCCCCGACGGCAAGAAGCTGGTCGCAGCGAACCCCCTCGCGCATCTCTTGGGGGACACCCTGCCAGAGCCGTCCCTGCAGCGCTACAAGCCTCCCCCTCGAGACTTCCAGGGCTTGCTGGCGACGGCGCTGAAGAAGCTGGACGAGCCGCCCCCGGCCAAGCGGAAGAAGCCGGCGAGTGGGGGGAAGAAAAAAGGGAGGGCGGTTGAGAAGTGA
- Protein Sequence
- MPNLLEELSADFDLEAAYVADTTCPVCYAEFLDSEDLLIHINQVHTATISSQPCQLCPTTCAGVIDYTKHVRDAHLLDLRACKYCAKVFLNGGKLKLHEARHSSNDNLFCCSQCNILFPNVILLEHHENKNHDNAKDGVILSCLPHLSEILCLKAKLLLQSVGKKTLQCSMCGFSSTNLREYTKHLEMKKCETFVCSLCSSVFTNKKNLLKHTQVTKKCMALNKSDERTILCHDCNKSVHPDAAKVHFKTCKALKCIECEFACKTVDQLSEHQAEKHPQDMNLRKCNFCTREFIGDYPMKKHVRRVHRSTFHLYKYRCMDCEAIFQHPQKLFAHFFSNHKSLLPFHCKICNKSFRVRKAFSLHIKLEHKSIGFVEFNDKYHVYFTAEKSINPFVPKCVLSQEELSAFDSGTEDIDKTGEPPTDTDLTNVETEDEKGKPKAKSKQIKTKKPKKANMDSVLVYSSDEEPLQEIRKRAIRGRRIGRRYKKGKVQFVCKTCDKNCYTYQNYLNHMNTHKKDQELECVKCSQKFNSKNSLTEHMKEDHASSKLTETLKNLLKKKQTAPNEPATNKESFKIILQKVKSDRTEVAATIKPVETNLSVKNFIENFTPDITDPTPKETVPTTSTISIKPYLSPFHREPLIKLRKFKDVPTYEAVPLKMPQRFKRHDQFVKTKIRIRMVNALQEVLPELDHNYTDNYDNDSYYDRNDIPDVAQEVSLDFTEEPLKYQVKGPPPKIVIPKMPKGYSKIHMATLQPDAPYFKIIKVDSDNMTEIKPAHWTPALGSEVISLPDGKKLVAANPLAHLLGDTLPEPSLQRYKPPPRDFQGLLATALKKLDEPPPAKRKKPASGGKKKGRAVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00703498;
- 90% Identity
- -
- 80% Identity
- -