Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438635.1:7211652-7230149[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0051 0.44 12.0 0.5 1 23 370 392 370 392 0.98

2 10 0.0023 0.2 13.1 8.6 1 23 399 421 399 422 0.94

3 10 0.095 8.1 8.0 3.6 1 23 426 448 426 448 0.97

4 10 0.0041 0.35 12.3 1.5 1 23 453 476 453 476 0.97

5 10 0.0041 0.35 12.3 0.2 1 23 480 503 480 503 0.94

6 10 1.1 95 4.7 0.5 2 23 592 614 591 614 0.95

7 10 0.056 4.8 8.8 2.4 2 20 630 648 629 651 0.90

8 10 7.7e-06 0.00066 20.9 1.4 1 23 657 679 657 679 0.99

9 10 3.3e-05 0.0028 18.9 5.0 1 23 686 708 686 708 0.97

10 10 8.8e-05 0.0075 17.6 1.2 1 23 714 737 714 737 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0051	0.44	12.0	0.5	1	23	370	392	370	392	0.98
2	10	0.0023	0.2	13.1	8.6	1	23	399	421	399	422	0.94
3	10	0.095	8.1	8.0	3.6	1	23	426	448	426	448	0.97
4	10	0.0041	0.35	12.3	1.5	1	23	453	476	453	476	0.97
5	10	0.0041	0.35	12.3	0.2	1	23	480	503	480	503	0.94
6	10	1.1	95	4.7	0.5	2	23	592	614	591	614	0.95
7	10	0.056	4.8	8.8	2.4	2	20	630	648	629	651	0.90
8	10	7.7e-06	0.00066	20.9	1.4	1	23	657	679	657	679	0.99
9	10	3.3e-05	0.0028	18.9	5.0	1	23	686	708	686	708	0.97
10	10	8.8e-05	0.0075	17.6	1.2	1	23	714	737	714	737	0.93

Sequence Information

Coding Sequence: ATGAGGTGCGTTGTTCCTAAATGCAAAAATGATTCCAGAAGCATTTCCAAGTCAGATGGGATCAcgttccactcGTTTCCTGTGGAGCCTTCACTCCGTAGATCCTGGTTAGAAGCCCTCGGCAGGACAGCAGCCTGGAAGCCCAAAGAGCGCAGTTCAGTCTGTTCTGCGCATTTTATGCTTGATGACCTGTATACGACTCGGAGTGGACTCCAGAAGGTTCGAGCGGGAGCTGTGCCTTTTATCCTACAGGTGTGCAGAATGTGCCTCGTCATAAGTGAAAGACTGTTTTCGATCGAGAAGTGTAACCTGGGGGAGGCGTTTGAACGACTCACAGGATTATCAGTAATCCAAGATGTCAACTTACCATCAAAACTCTGCCCTCAATGCGCTACGCGTCTCCACAACTACAATAAATTCAGGGAGAAAACGCTGAGAGTTAACGAGGTGATGGTAGATCTCCTGAAAAATCGTGATATTtttacacaaaaaacATTAGAATGTATTCCCGAAGATCTAAAAACACCTTTACTAACTAAGCACCTAAATAATGAATACAATTTAATGTTAGAATATACTGAACAAGATCCTACCATAGACTCACAAATAGAACAAACAAAAACAGGCATAGACAAAGAAATAGATATTAAAAACGAGCCAGAACAACCAGAAATATTTGTCGATGACTTCAGCACGAAAAGCGAGTCCAGAGATATATCATATTCAGAAGTCTCTGAAAACACAAACTTTACACTAGAATTGGAAATATCAACGAACACAGAAAATACTCAAGAATTTGATGTATCAGAAAGCGAAAAAGACGCCCTACCAGCTTTCGACAGCGAAGACAGCCTCCCTCTAGAAGTGactagaaagaaaaagaagaaacgAGAACCGGCGAAAAAGAAAGTAAAAGTTAAGAAGACGGAAAGAACATCTAGAGTTAAGAAGTCAGAACCGTCTGAACCTAAGATTGACCGGAGAAGAAAACCTTTCTTAAACCAAGATTTAAACGAGACTCTTTTCACAATAATAGATTTAACAGTTGAAGAACAACTCGCAGAAGTTTTGAAGAGACAAGAAACGGATAATTATAAGCATGCTGTGTTCAAATGTACGGAGTGTTTCAAAGGGTTTTTGGATCAGGACGCTTATGCGACTCATATGGTGCGGCATACCAGTGCATGCGGCGAGCACAGATGTGAGATCTGCAAAACGCACTTCAAGCAATCACATGCGCTCAGGAAGCATATAACTGCGCATCATTTACAAAGGTTCAGCTGTAATCACTGCCCCTACGTCACGACACACCGACAGACGGCAAGACTGCACGAGCGGTGGCATAAAGGGACCAAGTACCAGTGCCCGCATTGCGATCTAGAGTTTGTAAAGTTCACCACCTACATGGGCCACGTTCGCATAAAGCACCCTTCAGACTTTGTGTGCGAGCTGTGTGGATACTCCTTCGTGAGCGCTAAGGGCATCGAACTGCACAAGAAACTAAAGCATAGGGGCGAGGACGCTACTATACCAGAAGACGCTCCCTACTGCGAACCTTGTAACGTCCGCTTCGCGTCTTCAGAAGCACACCACAAGCACGTCAGCGTGTCAGCGCGCCACTCCGGGCCCGACCGGGAACACAACAAGCCCACGCGTGGACGCAAGTGCAGGGAACAGCTAGAAAGAGAAAAACTTCTTAACAAAGACGATGAAAATGACGAGGAAAAGAGACGAATGTATCCCAGTCAGCTGCGGAAAGTCGAGGGGCCGATATCTTGTGAGCAGTGTGGAATGGAGTTAGAAGACTCGCGAGCCTACCACGGCCACTTCCGGCGGATGCACCCCGACAAGAATCGAACCAACTACCCGTCCATGAAGTCGCCTTGCATGTGCGAGGTCTGCGGTCGGATATTCCAGAGCTGCGCCCTCCTAAAAGACCACACATGGACGCACACCGGCGAACGTCCCTTCAAATGCGAACAATGCGGCAAGTCCTTCAGAATGAAACAACGACTGGTCGCGCACCGACGCGTCCACAGCGCGGCGCGCACTTCCTATAGTTGCGGTGTCTGCGGTAAACACTTCTCTACGCACAGCAACCGTCAAAGGCACATGTTTATCCACACCGGCCTGAAACCCTACAAATGCGAGATGTGCGGCAAAGGCTTCAAGCACGCGAGCGAGAAGCGCGCGCACGTCACCTACGTGCATCTCAAGAAGCCGTGGCCCAAACGGGCACGGAGCAAGCGGCACGAGGGATCGCCGCCACAAGCGGGTGCGAGCGAGATGGATATGCAGCCAGTGTGGCCAGCTTGCGACCCTAAATTATCCGATATCAACATGATGGATGATAAGCCATTGTACTATAGATAA
Protein Sequence: MRCVVPKCKNDSRSISKSDGITFHSFPVEPSLRRSWLEALGRTAAWKPKERSSVCSAHFMLDDLYTTRSGLQKVRAGAVPFILQVCRMCLVISERLFSIEKCNLGEAFERLTGLSVIQDVNLPSKLCPQCATRLHNYNKFREKTLRVNEVMVDLLKNRDIFTQKTLECIPEDLKTPLLTKHLNNEYNLMLEYTEQDPTIDSQIEQTKTGIDKEIDIKNEPEQPEIFVDDFSTKSESRDISYSEVSENTNFTLELEISTNTENTQEFDVSESEKDALPAFDSEDSLPLEVTRKKKKKREPAKKKVKVKKTERTSRVKKSEPSEPKIDRRRKPFLNQDLNETLFTIIDLTVEEQLAEVLKRQETDNYKHAVFKCTECFKGFLDQDAYATHMVRHTSACGEHRCEICKTHFKQSHALRKHITAHHLQRFSCNHCPYVTTHRQTARLHERWHKGTKYQCPHCDLEFVKFTTYMGHVRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRGEDATIPEDAPYCEPCNVRFASSEAHHKHVSVSARHSGPDREHNKPTRGRKCREQLEREKLLNKDDENDEEKRRMYPSQLRKVEGPISCEQCGMELEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSCALLKDHTWTHTGERPFKCEQCGKSFRMKQRLVAHRRVHSAARTSYSCGVCGKHFSTHSNRQRHMFIHTGLKPYKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRARSKRHEGSPPQAGASEMDMQPVWPACDPKLSDINMMDDKPLYYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00706430;
90% Identity: iTF_00703398;
80% Identity: iTF_00704031;