Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438649.1:12446826-12470142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.92 79 4.9 2.5 2 21 57 76 56 77 0.94

2 13 0.031 2.6 9.6 4.3 2 23 131 152 130 152 0.95

3 13 1.6 1.4e+02 4.2 2.0 1 23 163 186 163 186 0.91

4 13 0.00023 0.02 16.3 0.6 2 23 193 216 192 216 0.97

5 13 0.04 3.4 9.2 0.2 1 23 222 244 222 244 0.93

6 13 0.005 0.43 12.1 1.8 1 23 250 272 250 272 0.98

7 13 0.52 44 5.7 0.1 2 19 283 300 283 303 0.89

8 13 0.2 17 7.0 0.1 1 23 381 403 381 403 0.96

9 13 1.2 1e+02 4.6 7.2 1 23 410 432 410 432 0.95

10 13 0.0008 0.068 14.6 1.8 1 23 460 483 460 483 0.95

11 13 0.0018 0.15 13.4 1.8 1 23 490 513 490 513 0.96

12 13 0.0022 0.19 13.2 0.2 2 23 531 553 530 553 0.96

13 13 0.00038 0.032 15.6 1.1 3 23 594 615 592 615 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.92	79	4.9	2.5	2	21	57	76	56	77	0.94
2	13	0.031	2.6	9.6	4.3	2	23	131	152	130	152	0.95
3	13	1.6	1.4e+02	4.2	2.0	1	23	163	186	163	186	0.91
4	13	0.00023	0.02	16.3	0.6	2	23	193	216	192	216	0.97
5	13	0.04	3.4	9.2	0.2	1	23	222	244	222	244	0.93
6	13	0.005	0.43	12.1	1.8	1	23	250	272	250	272	0.98
7	13	0.52	44	5.7	0.1	2	19	283	300	283	303	0.89
8	13	0.2	17	7.0	0.1	1	23	381	403	381	403	0.96
9	13	1.2	1e+02	4.6	7.2	1	23	410	432	410	432	0.95
10	13	0.0008	0.068	14.6	1.8	1	23	460	483	460	483	0.95
11	13	0.0018	0.15	13.4	1.8	1	23	490	513	490	513	0.96
12	13	0.0022	0.19	13.2	0.2	2	23	531	553	530	553	0.96
13	13	0.00038	0.032	15.6	1.1	3	23	594	615	592	615	0.95

Sequence Information

Coding Sequence: ATGCACCCAGATCTAATAATAAAGACAGAAGTAAAACAAGAGGCGATAAGCAGTGATGATGAGATTTGGATAGTGCAAACCGGCGATGATGAGTCTACAGGACCTCTCAAAGACATTCTGGAAGCTGCCAAGTCTGCCAAGgttaaTACGGGTGACAGTAAAACCAAGAAATGCCATACCTGTAGCAATAATTACCCATCGATAGAGTCTCTGACTTCTCACATATGTCGAGGAAAAAAACGTATAACTACCGAAGATGCAATGATAATACCAACGGAAGAAGATTTTATAAGGagGGCTCAAGGAAAACCGCGGCATTTATCTTCCGCGAATGCTGAGCTAATAGAGAAACACAAGAAGTCCAAAAACCTCTCTGAACCTCAAATAGTGACATGTCACAACTGTAATCAATCGTTCACGTCTAAAGTACGCCTTAAATTTCACATGCAATTCCACGACATGACATCAATGCTGACAGACGGCCAGTACAAATGCTTGCAATGCGTCGATATTTTTACAACGGAGACGCAGTTGTTCGACCATGTACACTTCACGCATGAAAAGATACGCAGATGGCAGTGTCCTGTGCAAGGCTGCCAGAAGACTTTCTATTTGAGGGCAACACTGACTAAGCACAGTCGAACGCACACAGACACGCGTCGCTACGTGTGTGTGACCTGCGGTAAACGCTTCTTGGATAAACAGACGTTGGATGAGCATGGTGTTACGCATTTACAgatcAAACCATACCAATGCCACATTTGCCTGAAACAACTGACCCGCGTCTCTCGTTTGCGCATGCATGTGCGCGCGCATGAAGAGGAATTATCGCCGACGCTGTTGCCCGTCTGCAGAGTCTGTCGCCGGGCGTTTAGAGATTCCGTTGAGGCTCAGGAGCATGCAACAAAATCATCGGATTGCATCGAAGCGATCGCTGGTGAAGTGAAGACAGAAGAAGAAACGGCTGTACAGTTGTCGCCAACCAGTGGGATTGTGCGGCAGACAATACAAGTCATTCAGTGCCCCTCCCCAAAAACGCGAGTACCACGTCAAGTAGCCTCGCCCGTAGCAGCCCCGCTTCTATCGTCGTTGACCAGCGATGCACTACCACTAATAAGAGTGGTTGAGATCGAGAAGGCTTTTAGATGTGAATATTGTGAAgaTGTTTTCTACATAGAAGAAGGGCTGAACGACCACAGGGCGATCCACAAGGGTGTCAAAAATCCTTTTACGTGTCATATCTGCAAAGTTAGCTTTGCTACCTATTCCAGATGCACAACCCACAAGACCACTCATGGTTTCTACAAGCGACCAGCGGCCGGCAATGACCAAGCTACGGGCGTCGTTGGTTATGGCGACTTTCCTACTGTCAAACACTTCTTGTGCGAGGACTGCGGAAGGTCGTATTTGCATTGGACTTACCTACAAGTGCACAGAAGAATGAAACATCCCAACGAAAACTACCCTCATAACTGCAACCAATGTGAAATGACGTTCCCTAACAGTTGGAGCCTAGCTTACCACAGGAAAAAACTTCACAGCAAAACCAGCCAAGAAGAGGTCACAAAAACGAGCGTTAACTACAGGATACCCTGCCGAGACTGTGACGAGGTCCTGCCAAACAAAACTGCTCTCTATAAGCATAGAAAGAAGGAGCATATTGGAGTATCCACGAGCTCTAACACTAGCGCTGCCGCCGGATCGGCTTGCAATAGCCAGGTTGAGAGAACGCCAATGTCTGTGCGCAGTAAGCTGGTGTCCTGCGGCCGCTCTTGGGCGTGCTCGCGCTGCCCCAAGCGCTTCCGGATCCGCTCCGAGCTGCGCTCGCATACTAGGCTCAAGCACCCGGCGTTTATCGCTGTACTAGAGGTGCAAGGTCGAAATCTGAGTGCTGAAGAGGCGGTCAGCATCATAAACTCAAACAACATCAGTCAAGACAGAATCATTGAGATCAGTGTCATGTCTTTTGCAAAGGGTACTTCAAGCATTGTCCCGAACTGCGCCCGCGCTCTCGCCTTGCTGGGGAACGTACCGCGGACACAGATCATGGTTCCTCGGACTCCGAACGACATGCATTGCTTTGgtcAGTATTTCAATATGTAA
Protein Sequence: MHPDLIIKTEVKQEAISSDDEIWIVQTGDDESTGPLKDILEAAKSAKVNTGDSKTKKCHTCSNNYPSIESLTSHICRGKKRITTEDAMIIPTEEDFIRRAQGKPRHLSSANAELIEKHKKSKNLSEPQIVTCHNCNQSFTSKVRLKFHMQFHDMTSMLTDGQYKCLQCVDIFTTETQLFDHVHFTHEKIRRWQCPVQGCQKTFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPYQCHICLKQLTRVSRLRMHVRAHEEELSPTLLPVCRVCRRAFRDSVEAQEHATKSSDCIEAIAGEVKTEEETAVQLSPTSGIVRQTIQVIQCPSPKTRVPRQVASPVAAPLLSSLTSDALPLIRVVEIEKAFRCEYCEDVFYIEEGLNDHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPAAGNDQATGVVGYGDFPTVKHFLCEDCGRSYLHWTYLQVHRRMKHPNENYPHNCNQCEMTFPNSWSLAYHRKKLHSKTSQEEVTKTSVNYRIPCRDCDEVLPNKTALYKHRKKEHIGVSTSSNTSAAAGSACNSQVERTPMSVRSKLVSCGRSWACSRCPKRFRIRSELRSHTRLKHPAFIAVLEVQGRNLSAEEAVSIINSNNISQDRIIEISVMSFAKGTSSIVPNCARALALLGNVPRTQIMVPRTPNDMHCFGQYFNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00701407;
90% Identity: iTF_00702357;
80% Identity: -