Esub009688.2
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438637.1:1595941-1607746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.098 8.3 8.0 1.8 1 23 238 261 238 261 0.96 2 14 0.012 1 10.9 0.4 3 23 286 307 284 307 0.96 3 14 0.0019 0.16 13.4 4.9 2 23 330 351 329 351 0.96 4 14 0.063 5.4 8.6 1.7 1 23 355 377 355 377 0.85 5 14 0.0032 0.27 12.7 1.4 1 23 381 404 381 404 0.97 6 14 0.042 3.6 9.1 3.0 1 23 410 433 410 434 0.96 7 14 2.9e-05 0.0025 19.1 0.5 1 23 440 463 440 463 0.96 8 14 0.03 2.6 9.6 3.4 1 23 523 545 523 545 0.94 9 14 0.0035 0.3 12.6 2.5 1 23 614 636 614 636 0.97 10 14 0.2 17 7.0 0.4 1 11 640 650 640 662 0.72 11 14 0.014 1.2 10.6 2.1 2 23 667 689 666 689 0.96 12 14 0.1 8.6 7.9 1.0 2 23 694 716 693 716 0.95 13 14 4.9e-05 0.0042 18.4 0.4 3 23 753 773 751 773 0.98 14 14 0.0031 0.27 12.7 2.1 2 22 780 800 779 800 0.96
Sequence Information
- Coding Sequence
- ATGGAGTACGAAGTGGCTGTGAAAGAGAGCCCCGGCCTCTGCCGGTGCTGTCTCTCGGAAGGTTGCTACAAGGATCTCGGCTCTGAATACTCTTGGATGAATGACACCGAAGTCTACGCTGATATGCTGCTTGACTGCTTCGATATTGGCATCACCCAACACAATGATGGCCCCAATGGCCCGAAGCGCCTCATCTGTGAAGTTTGCATCACAcgtctccgagacgcctgcaaCTTCAAGAAGCAAGTCGTGGACTCTGAGAAAAAGTTCATCGACATGCTCGGACGAGGGGAGTTTCGGATGATGGAGAAGCAATCGGTAATGCTACCTATCTACACCAGCGCAGTTCCAATGAAAGCAGAATCAATGGAGGAGGTGAACTTGAATGATGACTTTGACGATACTCATATTGAATACTTGGAAGATGCTGACTATATTGATGAAGACGAGGCAGTAAAAGCAGAGAGCGTAGAACCAACCCCATCATCGTCAACAACAGCGTCGAAGCGAGGCCGGCCTCGGAAAGCAGACGTCGAGCCTCCCGAGAAGAAACCTAAACTCAAGACCAAAGCCAAGATTGCTAAAGGTGGAAACACCCTCGAGGTCCCCAGCCAGGCTTCGAAAATACAACGTAACAGACTTCTAAAGTCGAACACTGTCACTATATTAGAACACTCAACCGTTATCCCCTTTAAATTCCAAGGAAAATCCTATTACTGCTTCTACTGCAACTCTCAACTCAGCACATTCCAAAACCTTAAAACACACGTAGAGTCCGAACACCAAAAAACACCAAAGAAATCCGTCTTCATCAACAAAGGGGCTATCGTGAAAATCGATGTAGCTTCAATTAACTGCAAGCTATGCAATACGAAACTGGAAAACCTAGACGATCTCGTCTCACACTTAAAAACAACACACAACAAATTGTTCTACGACGAACTAGGCTACGGTGTTATGCCATACAAACACTACCCTACCAACTGCCAATGCGCTATATGCCACAAAACCTTCGACTACTACATAAAACTAAACCAGCACATGAACCAACATTTCGGGAAACATGTCTGCGAAATCTGCGGGAAAAGCTTCCTGAACACAATCCGTTTGAAGACTCATTCCTTCTCTCACGAAGCTAGCTACCCTTGCAGCTTTTGCTCCGAAGTTTTCCGCACCTACTCGAAAAGAAAGAACCATTACGCGACAGCGCACAATGTTTCCAAAGACCATAAATGTCTGTACTGCTCTGAAACCTTCCCTAACTACGGTGCCAGGACCTTGCATTTGCGATACGCTCACCACGTTGATACTCCGATCTTTGACTGTCCAGTTTGTGGGAAATCGTTCCGTTTGAACAGCAAGATGAACTATCATTTGAACAGCGTTCACGCTAACCACAATTTTTCCGTTTTAGGTGGCAATACTGGCAATCCCGTGCCCGAGCTGTCAGAAAAAGTCCGTAAGTCGAAAGTGACTTCCACAAAACTCAACCGTATGAGAAACCATAACACGATAACCATCCTGCAAAACAGTACGGCAATTCCTTTTAAATGGCATCGTCAGTTTTACCTTTGTTTCTACTGCCATAAACCTTTTTCCACCTTTAATGAAGTAAAAGAACACACAAGCCAGCATAAAACTGTAAACATAAAATCAGCTGTGACATTCCTATGCGCGAACGATAAAGTCAAAATCGATATCACCTCCTTCAAATGCAAATTATGCGATCACGAACTCTTAAACATACACTCTTGTATGGACCACTTAAAGCTAACACATGGTAAAATCTTCGAAGACGCTGACATAGGTGTTATACCATACAAACACGAGGTAGACTCTTTCGACTGCGGTATTTGCAATGAGAAATTTCACTACTTCGTAAAGTTGAATCAACATATGAACTCCCATTTTGGGAACCACGTTTGCGAGACTTGCGGCAAATCCTTCCTCAGCGCTGCAAGGCGTAGACTACACTCACTAATGCACGCTAGCAATGTCCAATGCGAGCATTGCCCTGAGAAATTCAGGTCTTTGTCTATGAAGAATTATCACGTGAATAAAACACACCAATCTAACGTTAAATGTAGCTTTTGCTCCGAACAGTTCGCTAGCTACAAGCAAAGAAAAGTCCATCTAAAGTTAATTCATAATGTAGGATCGCTACACGCATGCCCGGTATGTAGCCGAGAGTTTCACTGCAAGAGTCGTATGgaatatcatttgaaaggtgtTCATTATAAAGAGAAGCATTTTGGTTGTCCTATGTGTGATCAGACTTTCTTTTCGAACTGGCAGTTGACGAAACATGTTAAGATTCATGAAATGGGACGCGGGAGTCAGTGCGAGTTGTGTTGTAAGACTTTTTCTAAAGCGAGTAGCTTGAAAGAACATCTCAGGACTTGTGTTAGTAAAAAGAAATAA
- Protein Sequence
- MEYEVAVKESPGLCRCCLSEGCYKDLGSEYSWMNDTEVYADMLLDCFDIGITQHNDGPNGPKRLICEVCITRLRDACNFKKQVVDSEKKFIDMLGRGEFRMMEKQSVMLPIYTSAVPMKAESMEEVNLNDDFDDTHIEYLEDADYIDEDEAVKAESVEPTPSSSTTASKRGRPRKADVEPPEKKPKLKTKAKIAKGGNTLEVPSQASKIQRNRLLKSNTVTILEHSTVIPFKFQGKSYYCFYCNSQLSTFQNLKTHVESEHQKTPKKSVFINKGAIVKIDVASINCKLCNTKLENLDDLVSHLKTTHNKLFYDELGYGVMPYKHYPTNCQCAICHKTFDYYIKLNQHMNQHFGKHVCEICGKSFLNTIRLKTHSFSHEASYPCSFCSEVFRTYSKRKNHYATAHNVSKDHKCLYCSETFPNYGARTLHLRYAHHVDTPIFDCPVCGKSFRLNSKMNYHLNSVHANHNFSVLGGNTGNPVPELSEKVRKSKVTSTKLNRMRNHNTITILQNSTAIPFKWHRQFYLCFYCHKPFSTFNEVKEHTSQHKTVNIKSAVTFLCANDKVKIDITSFKCKLCDHELLNIHSCMDHLKLTHGKIFEDADIGVIPYKHEVDSFDCGICNEKFHYFVKLNQHMNSHFGNHVCETCGKSFLSAARRRLHSLMHASNVQCEHCPEKFRSLSMKNYHVNKTHQSNVKCSFCSEQFASYKQRKVHLKLIHNVGSLHACPVCSREFHCKSRMEYHLKGVHYKEKHFGCPMCDQTFFSNWQLTKHVKIHEMGRGSQCELCCKTFSKASSLKEHLRTCVSKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00700462;
- 90% Identity
- -
- 80% Identity
- -