Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438645.1:16297383-16321192[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0053 0.45 12.0 0.9 1 23 235 257 235 257 0.98

2 11 0.39 33 6.1 2.8 3 20 266 283 265 286 0.93

3 11 1.1 90 4.7 4.0 1 23 290 313 290 313 0.95

4 11 6.8e-06 0.00058 21.1 2.8 1 23 321 343 321 343 0.97

5 11 0.00091 0.078 14.4 0.5 2 23 350 372 349 372 0.95

6 11 0.00068 0.058 14.8 0.4 1 20 385 404 385 406 0.93

7 11 0.016 1.4 10.4 1.2 1 22 413 434 413 438 0.90

8 11 0.0082 0.7 11.4 1.7 2 23 447 469 446 469 0.95

9 11 0.023 1.9 10.0 0.5 1 23 475 498 475 498 0.94

10 11 1.4e-05 0.0012 20.1 2.0 1 23 507 529 507 529 0.99

11 11 0.00011 0.0093 17.3 2.6 1 23 535 558 535 558 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0053	0.45	12.0	0.9	1	23	235	257	235	257	0.98
2	11	0.39	33	6.1	2.8	3	20	266	283	265	286	0.93
3	11	1.1	90	4.7	4.0	1	23	290	313	290	313	0.95
4	11	6.8e-06	0.00058	21.1	2.8	1	23	321	343	321	343	0.97
5	11	0.00091	0.078	14.4	0.5	2	23	350	372	349	372	0.95
6	11	0.00068	0.058	14.8	0.4	1	20	385	404	385	406	0.93
7	11	0.016	1.4	10.4	1.2	1	22	413	434	413	438	0.90
8	11	0.0082	0.7	11.4	1.7	2	23	447	469	446	469	0.95
9	11	0.023	1.9	10.0	0.5	1	23	475	498	475	498	0.94
10	11	1.4e-05	0.0012	20.1	2.0	1	23	507	529	507	529	0.99
11	11	0.00011	0.0093	17.3	2.6	1	23	535	558	535	558	0.96

Sequence Information

Coding Sequence: atgGAAATTCTAGAAGATATAGAGACACATTCAGATAGAAACCAACCATGTCGTGGATGTCTGCAAGGTGGTCATGAGTTAGCATTGAAGGAGTATAACATCCAATATGAGCCGCTGAAAGACcttttaaaggtggACTCAATAATATTATGCTACAAGTGCAAACAAATTGCTCGAAAAGCAGAATGTTTTATACAAAATGTACAGAAAAATCAGATTCTTCTACAGAACTATGAAGGAGACATCCCAGAATCCAAACAATGCTTCCCTCCTACAATCCTCAAACAAAAGACTCTCCCTCCGCTGGATTTATCGGTGACTGATGAAGAGGAAGTTGAATCTTGCACGGTTCTGAGCAGCGAGGTCAAGATGGAACCGGTGGAGGATACTAATGAAGACGaagaaatatttgtaaaagaaGAAGAACAACTAACTTCACAAAACCTAAAGCCAAAAGAGGAAGTAACAtcagaagaagaagaaagctGCAGCCAATATTCACCGAAGACTGAATGGAAAGGAAAGAGAAGGAAGATGGACTTATTAATACCGAGGAGACGTAAAGTTATGCTAGTCAAGACGTCTATGTCGGCAAGTACAGGCTCCTACGAAACAGAATACATAGTACAACGTGTATCACAGAAGCAGTGCATGAAAGAAAGAGAGCAAAGATCTCACGACAGTTACTACCTCTCGAGTGCCTACCGATGTGCCGATTGCGTCAAGGGGTTTATGCTGAAAACCAGCTTCGATAAGCATATGCAGTTACATAGTTTGAGTAGAGGCGATGTTCTCTGTGACATCTGCAAGCAGAGATTTGAATCACCAAGGAAAATGGCGAAGCATAAACAATGTCATATTTATCGCTACAAATGTACGAAATGCGACACTTACCGCATCAGCCATAGCTCCATAAAAAGTCACTTTGCCACCAGGCACAGCCGTTTTGGACCCACTATGCATCAGTGCACGGTGTGCCCTAAGGTTTTCAAAAACAAAGTGTCCCTCCGCAACCACGAGAAGTACCACTCGAGACTGGAGAGAGTGACCTGCGACGCCTGCCAACTCACTTTCATCAGTAAAGAAACGCTGCGGAATCATATACTTAGAAAACACCCTCCAGATGGCGTGCCATACAAGTATCGTAAGCGCCATGTATGCCAACACTGCGGCCTGGCGTTCAAAGAGCCAAATCTTCTGAAGAACCATGTCACTATGTGTACGGAGAGCCGGCCTTACTACTGCGTGGAGTGTGatagaAGCTTCAAATCCGACAAAATCCTGGCGCACCATCTCAAAACTGCTTCTCGTCATGTCTTCAACGCAGATTTACgTGTCTCCTGTGATCAATGTGAGAAGCGGTTTTCCTGCCGCAGAGCCTTGGAGCGGCATGTGAACAGCGTACACCTTAACTTGAGGCCGTATGCCTGCGATAAATGTGATAGAGCGTATCTAAACAACTGGTCGCTGCGGGAACACAAGATGTACACCCACGAGGGGTACAGAAAGGAGCGGCGGTACCCCTGTACGCTGTGTGACAAAGTATTTCATCGGAACTCTATCCTGAAGTCGCACATTCGGACGCACACGGgtgagcggccttatcgctgcaAGCACTGTCCTTCGCAATTCGTACAGAGCTCTCAACTGCGAACACACACAAACCTGGTCCATCTGAAACTGACTAGAGACGGAAAACCAAAGTCAACCGCGCTCAAGTGA
Protein Sequence: MEILEDIETHSDRNQPCRGCLQGGHELALKEYNIQYEPLKDLLKVDSIILCYKCKQIARKAECFIQNVQKNQILLQNYEGDIPESKQCFPPTILKQKTLPPLDLSVTDEEEVESCTVLSSEVKMEPVEDTNEDEEIFVKEEEQLTSQNLKPKEEVTSEEEESCSQYSPKTEWKGKRRKMDLLIPRRRKVMLVKTSMSASTGSYETEYIVQRVSQKQCMKEREQRSHDSYYLSSAYRCADCVKGFMLKTSFDKHMQLHSLSRGDVLCDICKQRFESPRKMAKHKQCHIYRYKCTKCDTYRISHSSIKSHFATRHSRFGPTMHQCTVCPKVFKNKVSLRNHEKYHSRLERVTCDACQLTFISKETLRNHILRKHPPDGVPYKYRKRHVCQHCGLAFKEPNLLKNHVTMCTESRPYYCVECDRSFKSDKILAHHLKTASRHVFNADLRVSCDQCEKRFSCRRALERHVNSVHLNLRPYACDKCDRAYLNNWSLREHKMYTHEGYRKERRYPCTLCDKVFHRNSILKSHIRTHTGERPYRCKHCPSQFVQSSQLRTHTNLVHLKLTRDGKPKSTALK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00701380;
90% Identity: -
80% Identity: -