Esub009683.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438637.1:1583173-1585783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9 1.6e+02 4.0 0.1 2 23 300 321 299 321 0.94 2 14 0.33 28 6.3 0.0 3 23 350 371 348 371 0.90 3 14 0.42 36 6.0 2.0 2 23 392 413 391 414 0.93 4 14 0.007 0.6 11.6 1.7 3 23 421 442 419 442 0.97 5 14 0.11 9.3 7.8 5.6 1 23 447 470 447 470 0.91 6 14 0.16 14 7.3 0.5 2 20 473 491 472 493 0.91 7 14 0.19 16 7.1 2.0 1 23 545 568 545 568 0.97 8 14 0.0069 0.58 11.6 0.3 2 23 643 665 642 665 0.94 9 14 4.2e-05 0.0036 18.6 0.5 3 23 672 693 670 693 0.95 10 14 0.007 0.6 11.6 5.9 2 23 698 720 697 720 0.95 11 14 0.0013 0.11 13.9 0.3 1 23 725 748 725 748 0.97 12 14 0.0016 0.14 13.6 5.5 1 23 752 775 752 775 0.97 13 14 0.085 7.2 8.2 1.2 3 23 783 803 782 803 0.95 14 14 1.3e-05 0.0011 20.2 1.1 1 23 809 831 809 831 0.98
Sequence Information
- Coding Sequence
- ATGGTGACGATGATCAGCTCTACAGGTAGACATACGCAGCCAATGGTGACCATGATCATGTATATCGATAGACGTAAGAGACCAATGGTGACGATTATCATCTATAAATATAGACGTAAGAGAACAATGGTGACGATTATCATCTCTATAGATAGACATAAGAGAGGAATGGTGACGATGATCATCTCTATCGGTAGATGTAAGAGGCCAATGGTGCCGATTGTCATTTCTATAGATAGACGTAAGAGGCCAATAGTGACGATGATCATCTCTATAGATAGACGTAAGAGGCCAATAGTGACGATGATCATCTATATAGATAGACGTAAGAGACCAATGGTGACCATGATCATCTATATAGATAGACGTAAGAGGCCAATAGTGACCATGATCATCTATATAGATAGACGTAAGAGACCAATGGTGACCATGATCATCTATATAGATAGACGTAAGAGGCCAATAGTGACGTTGACCATCTCTAAAGATAGACGTAAGAGGCCAATGGTGACGATGATCATCTCTATCGATAGACGTAAGAGGCCAATGGTGACGTTGGTCATCTCTATAGATAGACGTAAGAGACCAATGGTGACCATGATCATCTATATAGATAGGCGTAAGAGGCCAATAGTGACGTTGACCATCTCTAAAGATAGACGTAAGAGGCCAATGGTGACGATGATCATCTCTATCGATAGACGTAAGAGGCCAATGGTGACGATTGTCATTTCTATAGATACACTTAAGAGGCCAATAGTGACGATGATCATCTGTATTGATAGACATCGGATGCCCGGAAAGGCCGACCGAATAACGTCCGAGCGACGAAGAAAAAACTTGAAAACGATACTTGATAATACGACCATCCTCCCCTTCAAATGGAGGGGGGTGATCGTATGCTTCTACTGTAGCGCACCCATTGACGATTACGTAGAGTTCAGGAAGCATACGAAAGCGCACGGACCATGTAGCATCAAACACTTTGCGATGAAAGAACTGAAAGGCAAAGAAATTTCTGTTAACTTAGACGTGTCAGAAATCGCGTGTGAAATTTGCGACGAACAGTTCAAAAGTGTTGAAGTTATTATAGAGCATTTGAAGAATGAGCATAGACTTTTCTACGATAAGGAGGTTTACAGCGAAATCTTAGAATACAGGCTGATGGATTTAATCTGTACTCAATGCGATAAGCAGTTGGAAACGTTTAGGCGACTCGTCAGTCATGTTAATAAGCATCATCCTGTAAACAGATTCGGCTGTCACGATTGCGGACGATTGTTTAATAAGAAACGAGATATTTTCTCGCATATTAACGTCTACCATCGATTGGGAGGATACGTATGCAAGCATTGCAGTTTTAAATGTAAGACTCGCGTTGAATTGCGGTCGCATTCATCACAGGTTCACCCGAAAACCTGCGACTATTGCACGAGGAAGTTTCAATCTACTCTTGGTCTGAAACAGCATGTGATTAGATGCAAAGTCAGGCTGCTCGCTCAGGGCGAAACTGAGATACTAAACCAGAATGTGAGCACTGCGCGAACCCATGAGCAAATCGTTCGAATCAGGCAGAATATCCAATGCGTCTTAAACATGTCCACCGCTATCCCCTTTAAGTTCAGAGTCAAATTCAGCTGTTTCTACTGCTTCATCAAGTTTGACGACTACGAAATTCTTAAACAGCACACCAAAACTGAACACACGGTTTGCGATATCAAATGTAAATCCATGAAGTCTTGTAAAGGCAAACGGACCTTCGTCAGGGTTGATATCGCTGAGTTGGCTTGTAAGCTCTGTTCTATACCTATGCCCGACTTGGGAACGTTCATTGACCATGCTATCACCAACCATAACGCGGATTACGACAAAACTGTCAGTCTCGAAACCTGTTTCGAGCCTTACCGCTTGCATAAAGGTAGCATCCCCTGCCTCGAATGCCCTAAAGTCTTCCGTTACTTGAACACAATGCTGAAACACTTCAATTCTGAGCACAGCAACAACAACGTCATCTGCGATTACTGCGGCCGTGGTTTCCGCAGCACGACTAACCTCAAAATGCATTTACAGAACAACCACACAGGTTCATGTGAGTGCAAAACTTGCCATGCTAAGTTCAAAAACCACTCTGTTCTGATCCGGCATATGGCTAAGATTCACAATGAGAAGACTTTCAAATGTCCCAACTGTTCTGAAATGTTCGAATCCGCTTACCAAAGACAGATACATCTCATAAAAGTTCATGGGATCGGTCATAAATGTGAATACTGTGGAAAGATGTTTACGAAACATTCATTCATGGATATACATGTGAGACGGACGCATTTGAAGGAGAAAAATGTTGCTTGTGGGGTCTGTAATGATAAGTTCTTTGATAACCATCTGTTGAGGATGCATATGGTGAAACATGATGGTGAGAGGAAGTTCAAGTGTGAATTGTGCGGGAAGGCATTTTTAAGGCAGAAGAATTTGAGGACGCATTTGGATACGCATAAGAAGTATGGTTTTGTTCAGTGA
- Protein Sequence
- MVTMISSTGRHTQPMVTMIMYIDRRKRPMVTIIIYKYRRKRTMVTIIISIDRHKRGMVTMIISIGRCKRPMVPIVISIDRRKRPIVTMIISIDRRKRPIVTMIIYIDRRKRPMVTMIIYIDRRKRPIVTMIIYIDRRKRPMVTMIIYIDRRKRPIVTLTISKDRRKRPMVTMIISIDRRKRPMVTLVISIDRRKRPMVTMIIYIDRRKRPIVTLTISKDRRKRPMVTMIISIDRRKRPMVTIVISIDTLKRPIVTMIICIDRHRMPGKADRITSERRRKNLKTILDNTTILPFKWRGVIVCFYCSAPIDDYVEFRKHTKAHGPCSIKHFAMKELKGKEISVNLDVSEIACEICDEQFKSVEVIIEHLKNEHRLFYDKEVYSEILEYRLMDLICTQCDKQLETFRRLVSHVNKHHPVNRFGCHDCGRLFNKKRDIFSHINVYHRLGGYVCKHCSFKCKTRVELRSHSSQVHPKTCDYCTRKFQSTLGLKQHVIRCKVRLLAQGETEILNQNVSTARTHEQIVRIRQNIQCVLNMSTAIPFKFRVKFSCFYCFIKFDDYEILKQHTKTEHTVCDIKCKSMKSCKGKRTFVRVDIAELACKLCSIPMPDLGTFIDHAITNHNADYDKTVSLETCFEPYRLHKGSIPCLECPKVFRYLNTMLKHFNSEHSNNNVICDYCGRGFRSTTNLKMHLQNNHTGSCECKTCHAKFKNHSVLIRHMAKIHNEKTFKCPNCSEMFESAYQRQIHLIKVHGIGHKCEYCGKMFTKHSFMDIHVRRTHLKEKNVACGVCNDKFFDNHLLRMHMVKHDGERKFKCELCGKAFLRQKNLRTHLDTHKKYGFVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -