Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438637.1:3004945-3016495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 9.3e-06 0.00079 20.7 0.2 1 23 305 327 305 327 0.98

2 10 0.00059 0.051 15.0 1.5 2 23 352 374 351 374 0.96

3 10 0.14 12 7.5 3.7 2 23 397 419 396 419 0.94

4 10 5.9e-05 0.005 18.1 1.2 1 23 423 445 423 445 0.98

5 10 0.00071 0.061 14.7 3.4 1 23 450 472 450 472 0.97

6 10 5.8 5e+02 2.4 1.4 1 23 479 502 479 502 0.80

7 10 4.9e-05 0.0041 18.4 1.2 1 23 509 532 509 532 0.96

8 10 0.033 2.8 9.5 2.1 1 23 538 562 538 562 0.96

9 10 3.3e-05 0.0028 18.9 0.9 1 23 567 590 567 590 0.96

10 10 5.2e-05 0.0044 18.3 3.2 1 23 598 620 598 621 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	9.3e-06	0.00079	20.7	0.2	1	23	305	327	305	327	0.98
2	10	0.00059	0.051	15.0	1.5	2	23	352	374	351	374	0.96
3	10	0.14	12	7.5	3.7	2	23	397	419	396	419	0.94
4	10	5.9e-05	0.005	18.1	1.2	1	23	423	445	423	445	0.98
5	10	0.00071	0.061	14.7	3.4	1	23	450	472	450	472	0.97
6	10	5.8	5e+02	2.4	1.4	1	23	479	502	479	502	0.80
7	10	4.9e-05	0.0041	18.4	1.2	1	23	509	532	509	532	0.96
8	10	0.033	2.8	9.5	2.1	1	23	538	562	538	562	0.96
9	10	3.3e-05	0.0028	18.9	0.9	1	23	567	590	567	590	0.96
10	10	5.2e-05	0.0044	18.3	3.2	1	23	598	620	598	621	0.96

Sequence Information

Coding Sequence: atggcAGTGGAAAAACTAGAAATAGAGACTTATTTCGGGATGTGTAAGTGCTGTCTCAAATCTGGGTATCTGAAACCTATGTGGGTCGTACAAAATGACGAGAAGGAAGCCTACGCCAAGATGCTCATTCAATGTTTTTCTATTCCGTGGACTATAGAAGGCTCTGAGGAAGAGGACCAGATCTGCGAGATTTGCGTAATGAAGCTGAAAGAGGCCAACAAGTTCAAGCAACAGATTATGCAGAATCGGATTCGAAAGCAAAAGATAGaagttgaagacgatgaaataaaaacagaacCGGAAGAATCTATATCGGAACCGGAAGAGTCATATGACGTTGAATACTTAGACGAAGAGCTTTTGCACAAAAACCTTGAAGAAACGGACACCAATGAGCAGAACGGAGAATATGATGTGGATTATCTTGAAGATATTGAAATGCTTGATGATGACtttgaaaatgatgatgatgaatcataTAAATTTGATGaggaagatgatgatgaagATGATAAAGACTCGGAGGCGTCTAAATCAGTGCCGAGAAAGCGAACGCCGCGGACAGGGGATGCTACGAGTGAAACGGACACACCCAAACCGAAGTGGCCGAAGAAACTGCCTTTGCAGGAACGTTGGAAAACTTATAGGCAGTACAcagATGAGGACATGATGTTGGCTGTGGATGAGGTGATGAACAAGACAATGAGCCAGAAACAAGCCGCCCTTAAGTACAACGTGCCTGTCAAGACGCTGGGTGCCAAGATCAGAGCTAATAAGAATTTGGAGGAGGCTGAAGATGAAACAAAAGGCGACTACGAAGCCCCAGCGGTCATACAGAAACACAGAGATAATATACAGTCCGTACTGGCTTTCTCCAACGCGACCCCTATACGAGGCTTCTGGGGAATGGGCTTCGTTTGCTCGATATGCCCCCGTCAATACGCCAATCCATCCGAATTGAAAGTACACACGCAAAAGCATGAAAACCTCCCCCAACTTTTCAAAGTCAACCACGTGAGAGGTCATATCGCTAGGCTGGACGTAACCGGTCTGAAATGCAAACTTTGCAACACAAGATTCGCGAAGCTGCAATCCCTGATGCAGCATCTAAAGAGGATACATGGAAAACCTATGcattttgatataaataaccATATGGTTCCGTTCAAATTCGATTCGGATTTGCTACAGTGTGCGGATTGTACGGATACTTTCAAACACTGTAAGACCTTATCCGAACACATGGCCAACACACATTATAGGAACTATATATGCAATGAATGCAATAAAGGATTCTTTAATCTCTCCCATCTAGCTGGGCACAGAGAAACGCATCAGTCCGGTGAATTTCACTGCGGTGAATGCGGAAAAGTCTTCACAACACTGCGAAAGAAGTCAAAACATGAACGAATGCATGTTACTCGGGGTAAAAACTACAAATGTAAATTCTGTGATCTCTGGTTCTATAACGTAACGCAGAGGTATAACCATGAGTTGAGAATACATCCAAACGATAAGCTTGAATTCGATTGCAGTAATTGCGAAAAAACATATTCTAGTTTGAAATTACTTCGTATGCATATGAATAAAGTTCATTTAGAGCCTCAGAAGCATGAATGTCCTGTGAAAACTTGCAAGAACTCTTTCTACTTAAAGCGTGCGCTAAAAGAGCATATTAAACAGCATGATTTCAAGCTTTTTCAATGCCCAAAGTGCTTAAAGATGTTCAAATCAAATGTTACTCTCAAATCTCATACTATATCAGCACATACGAGTGACAGAGAAAGAAAATTCAGGTGTGAGGAGTGCGATATCAGTTATTTGAAGAAGGATAATTTGAACAGGCATATGAAGAAACATCATTAG
Protein Sequence: MAVEKLEIETYFGMCKCCLKSGYLKPMWVVQNDEKEAYAKMLIQCFSIPWTIEGSEEEDQICEICVMKLKEANKFKQQIMQNRIRKQKIEVEDDEIKTEPEESISEPEESYDVEYLDEELLHKNLEETDTNEQNGEYDVDYLEDIEMLDDDFENDDDESYKFDEEDDDEDDKDSEASKSVPRKRTPRTGDATSETDTPKPKWPKKLPLQERWKTYRQYTDEDMMLAVDEVMNKTMSQKQAALKYNVPVKTLGAKIRANKNLEEAEDETKGDYEAPAVIQKHRDNIQSVLAFSNATPIRGFWGMGFVCSICPRQYANPSELKVHTQKHENLPQLFKVNHVRGHIARLDVTGLKCKLCNTRFAKLQSLMQHLKRIHGKPMHFDINNHMVPFKFDSDLLQCADCTDTFKHCKTLSEHMANTHYRNYICNECNKGFFNLSHLAGHRETHQSGEFHCGECGKVFTTLRKKSKHERMHVTRGKNYKCKFCDLWFYNVTQRYNHELRIHPNDKLEFDCSNCEKTYSSLKLLRMHMNKVHLEPQKHECPVKTCKNSFYLKRALKEHIKQHDFKLFQCPKCLKMFKSNVTLKSHTISAHTSDRERKFRCEECDISYLKKDNLNRHMKKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00700956;
90% Identity: iTF_00703870;
80% Identity: iTF_00703870;