Esub008258.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438635.1:5611530-5625431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00031 0.027 15.9 1.9 1 23 255 277 255 277 0.98 2 11 0.38 32 6.1 1.2 1 23 284 306 284 306 0.95 3 11 3.5e-05 0.003 18.8 0.5 1 23 337 360 337 360 0.98 4 11 1.4 1.2e+02 4.4 0.0 3 23 369 390 368 390 0.95 5 11 0.0037 0.32 12.5 0.3 2 20 401 419 400 421 0.94 6 11 1.9 1.6e+02 4.0 1.3 3 23 434 454 434 454 0.94 7 11 0.0059 0.51 11.8 0.2 2 23 463 485 462 485 0.92 8 11 0.00022 0.019 16.3 4.8 2 23 496 517 495 517 0.96 9 11 2.2e-05 0.0019 19.5 3.6 1 23 523 545 523 545 0.98 10 11 0.00025 0.021 16.2 0.6 1 23 551 573 551 573 0.94 11 11 1.3e-05 0.0011 20.2 0.5 1 22 579 600 579 602 0.90
Sequence Information
- Coding Sequence
- ATGGACCCTTCACAGGCTTGCAGAATATGCCTTATCACAGATATAAAACTCTACGACATGGACAAATATAGATTGAAATCCATTTACGAAGATTTGTGCGGGAGCAATTTTCAACTCCGTAGTACCCCACAGTTTACGTGTGTTTACTGCTCCGCGTTGTTGAAGAAGTTTGCGTCGTTTAAAATAAAGTGTGAGCAGGCCAGACAGCTGTTGGAATTTCTATGGAGTAATGATAATCAGattaCCGCTGCTAGGAATATAGACACAATTAAATCAAATATAGCCCATCCTTACAAACAACATGAAATCCACAATATTGACTCCACAGTAGCAGAAATAAAGGGTGAATATACAGAATTGGAGGACAATGAAACAAATGATATTGATAGCAAAAAGTTTTTCACcgattttaattataaatgtgACAGTGATGATGAACCTTTAgcgaaaaaaatcaaaactaagaggAAAAGGGTGAAAAATCACACATTAGATATAAAAACTGAGATTGATTATGATGTCATACAACCTGAAGATTTTGAAGACCAAAGTAACATAGAAAACTTTGATGATAGTAACAAAGAAGGTAACATAGAGAGTAACAAAGATAGTAACTTAGAGAATAACAAAGATAATAACTTAGAAGATAGCAAAAAAGTAGTAATTGCGAATTGGGAGTTTGATTTAGTAACATTAACAAAAGAGCAACAAATTGAAGAGGTTTTGTCAAGGAAGGAAACAGCAAATTACATGAACTCCAGATATAAATgcaattattgttttaaaggaTTCATGACAGAAGTTACTTATAAAAATCACATGATTTTACATGATGAGTCAATGGGCCCCCACTCCTGCGCTATCTGTCAATCCCGCTGCCCGACTACCCGCGCGCTGACTGCCCACGCGGGCACACACTCGCGCCGATACGTCTGCCGTGTCTGTGCACACGTGGATAAATCGCACCAGAGGGCTAAAGAGCATGCGCAGTGGCATAGAGGTCATAAATACACATGCCAAGTGTGTGGCGCGTCCTTCCAACGCAGCACAACGCTCCTCACGCACGTGCGGGTGAGGCACTCGCGGGGGGACGCGGCGGCCGCGTGCGACGCGTGTGGAGCTGTCTTTATAGGGGAGATTGGGCTTAGTATACACAAGAAGAAGGCGCATAGAAACATAGATTCGAAAGCAGAGAGTTCAGAGTGCAGGCGTTGCGGCGCGAAGTTCAAGAACGAAGCCGCATTGAAGAGACATCGAGAATTCGCCACCAGCGACATCTGTGATACTAATCTTAGTTGGTGCGAGCATTGTGGCGAAAGTTCCATAACTGAAGAGCTGCACAGAGAACATGTTAAGATACACCAGCGAAGCCCGACAACGTCGCTCACCTGTGAcgagTGTTCCTCCACGTTCAGCACGGAGCGGTCACTGTCAGCGCACGTCGGTCGCGCGCACGGATCCGCCAACAAGCTGCGCACGCGCTGCGTCTGCGAGCTATGCGGACATACTTGCAATTCTCGCTCACTGCTAGCAGCTCACCAACGCACGCATTCGGGCGAGCGACCGTATCACTGCGGCCTCTGCAGCAAGCGGTTCAACAAGCAACAGCTGTTACAGaTCCACATGCGAACACACACGGGCGAGCGTCCTTTCCAATGTGCCGCCTGCCCCAAGGCGTTCAAACACAAGGCTGCGCTTAACCGGCACGACCGGGTCCACACGGGAGTGCGTCCGTACCGCTGCACCACCTGCGGTAAGACCTTCTCGCAGTCCAACTCCATGAAGCAGCACGCGGCCGCGGTACACATGAAGGCACCGTTGTATGCACGGAAGAACAAACAGATTGactttattatgtag
- Protein Sequence
- MDPSQACRICLITDIKLYDMDKYRLKSIYEDLCGSNFQLRSTPQFTCVYCSALLKKFASFKIKCEQARQLLEFLWSNDNQITAARNIDTIKSNIAHPYKQHEIHNIDSTVAEIKGEYTELEDNETNDIDSKKFFTDFNYKCDSDDEPLAKKIKTKRKRVKNHTLDIKTEIDYDVIQPEDFEDQSNIENFDDSNKEGNIESNKDSNLENNKDNNLEDSKKVVIANWEFDLVTLTKEQQIEEVLSRKETANYMNSRYKCNYCFKGFMTEVTYKNHMILHDESMGPHSCAICQSRCPTTRALTAHAGTHSRRYVCRVCAHVDKSHQRAKEHAQWHRGHKYTCQVCGASFQRSTTLLTHVRVRHSRGDAAAACDACGAVFIGEIGLSIHKKKAHRNIDSKAESSECRRCGAKFKNEAALKRHREFATSDICDTNLSWCEHCGESSITEELHREHVKIHQRSPTTSLTCDECSSTFSTERSLSAHVGRAHGSANKLRTRCVCELCGHTCNSRSLLAAHQRTHSGERPYHCGLCSKRFNKQQLLQIHMRTHTGERPFQCAACPKAFKHKAALNRHDRVHTGVRPYRCTTCGKTFSQSNSMKQHAAAVHMKAPLYARKNKQIDFIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698571;
- 90% Identity
- -
- 80% Identity
- -