Esub027810.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438649.1:6384226-6385983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.3e-05 0.0037 18.5 1.0 2 23 174 196 173 196 0.95 2 8 2.6e-05 0.0022 19.2 3.3 1 23 201 224 201 224 0.92 3 8 0.0002 0.017 16.5 0.3 2 23 228 249 227 249 0.97 4 8 1.8e-05 0.0016 19.7 0.2 2 21 254 273 253 274 0.94 5 8 5.2e-06 0.00044 21.5 1.8 1 23 290 313 290 313 0.95 6 8 0.0029 0.25 12.8 0.4 1 23 319 341 319 341 0.96 7 8 6.5e-05 0.0056 18.0 2.4 1 23 347 369 347 369 0.98 8 8 0.0001 0.0086 17.4 3.0 1 23 405 427 405 427 0.99
Sequence Information
- Coding Sequence
- ATGACTAATATATCCGAAGCGCTTAGAAGCATAGTTGGCGGTAATAAAAACTTCTGCTGTTTGTGTTTCAACATTTGTGACGCTGAAGATCTGGTTTCTATTGAAGATGAAGCCAATATTATCTGCCTGAACAATACTGAGAAATTAATGATATCGGATCTAATACAAGTGGTACTTGGGAATGATTTTAAGAAGTATGTTGAAACAGTGGAAAAAATCTGCAAACCATGTGCAATACATCTCGAAAGATGCTTTACATTTATTGACATCTGCAAGAATAATGCTACATCGTTGACAGAAATGCTTGTTAAGCTGGATGCAGCTATACAAAATGTCATAAAACCAGAGGGCTCCTCAGTCTACGTACCTATAAGTGTGGACACCCTATCAAGTCACATTCTTTATGACAATCAAAaggtttattcacaaaaggaagcgtacaaacaatttaaaatattaaatgcaCCTAAAAAAGATCCAGATCAACAAAATATTAAGGAAATACTTATTAACAGGGTTCAATGCTTCGAGTGCgataaaagttttaattcaaTAAGCTATCTTAAAAGCCACTACACTAAAGTCCACATGGCTATAGCTTACAAGTGCTTGAAATGTCCAAAATCTTTCAAATCTAAATCCAGACTTAATCGACATGAAACTTACAGTCATAGAACAATGACATGCGAAGAAtgttcaaagatattcaataataGGAAGGCATGGAAAGTACATCAAATAGTACATAAAACATCTATTGTTTGCCCAAAGTGTGGGCGAACGTACAAAAATAAAGCAACCTTTAGGAACCACATCAATTTGAACATATGCAGCCAAAAAAGTCGACATAGCCCTGCTAATGCAAAGTACACTTGCGACTATTGCAATAAGAAGTACACGCAAAAAGTATCCTTAAAAATTCACATACAATTCGAACATGGAAACTACAAAGGTCATATCTGCGAATGGTGTGGAAAAAAGTTTTGGGCTCAGAGCAGATTAAAAGCTCATATTGTAACACATACCCAAGAAAAGAACTTTACATGTTCTCTTTGCACCAAGAAGTTTGTAACCAAAGAGTCTCTGTTATATCACACAAGGTTACACACAGGAGAGAAGCCTTACAAATGTTCAGAATGCTCAAGCAGTTTCTTATCGGCCTCCCGTAGGTCAGACCATTTTAAACGACACCATGTTGGGGCTACAACAGATTTTAAATGTGAAGTGTGTCATGGAATGTTCAAATCAAATAATGCTTTACTTAAGCACAGAAAAACACATGAAGAACTGATAACTTCTTCCATAAGAGAAGTTGATGACAACAAAgatcaaattttaataaaaatgcaaTGTAACAAAAAATTTCTTGTAAACACAGATAAAGGTGTTTGTGAAATAATAAGATAG
- Protein Sequence
- MTNISEALRSIVGGNKNFCCLCFNICDAEDLVSIEDEANIICLNNTEKLMISDLIQVVLGNDFKKYVETVEKICKPCAIHLERCFTFIDICKNNATSLTEMLVKLDAAIQNVIKPEGSSVYVPISVDTLSSHILYDNQKVYSQKEAYKQFKILNAPKKDPDQQNIKEILINRVQCFECDKSFNSISYLKSHYTKVHMAIAYKCLKCPKSFKSKSRLNRHETYSHRTMTCEECSKIFNNRKAWKVHQIVHKTSIVCPKCGRTYKNKATFRNHINLNICSQKSRHSPANAKYTCDYCNKKYTQKVSLKIHIQFEHGNYKGHICEWCGKKFWAQSRLKAHIVTHTQEKNFTCSLCTKKFVTKESLLYHTRLHTGEKPYKCSECSSSFLSASRRSDHFKRHHVGATTDFKCEVCHGMFKSNNALLKHRKTHEELITSSIREVDDNKDQILIKMQCNKKFLVNTDKGVCEIIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -