Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438644.1:27900099-27908733[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0023 0.19 13.1 2.5 1 19 267 285 267 290 0.95

2 10 3.9 3.4e+02 2.9 1.7 5 23 299 317 297 317 0.94

3 10 0.00015 0.012 16.9 0.4 3 23 325 345 323 345 0.96

4 10 3.4e-06 0.00029 22.0 2.6 1 23 353 375 353 375 0.97

5 10 0.0012 0.099 14.1 1.6 1 23 384 407 384 407 0.96

6 10 0.00027 0.023 16.1 0.2 1 23 413 435 413 435 0.97

7 10 3e-07 2.5e-05 25.4 2.4 1 23 441 463 441 463 0.98

8 10 0.00022 0.018 16.4 0.8 1 23 468 490 468 490 0.98

9 10 3.6e-06 0.00031 21.9 4.2 1 23 496 518 496 518 0.97

10 10 0.00033 0.028 15.8 0.7 2 23 525 547 524 547 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0023	0.19	13.1	2.5	1	19	267	285	267	290	0.95
2	10	3.9	3.4e+02	2.9	1.7	5	23	299	317	297	317	0.94
3	10	0.00015	0.012	16.9	0.4	3	23	325	345	323	345	0.96
4	10	3.4e-06	0.00029	22.0	2.6	1	23	353	375	353	375	0.97
5	10	0.0012	0.099	14.1	1.6	1	23	384	407	384	407	0.96
6	10	0.00027	0.023	16.1	0.2	1	23	413	435	413	435	0.97
7	10	3e-07	2.5e-05	25.4	2.4	1	23	441	463	441	463	0.98
8	10	0.00022	0.018	16.4	0.8	1	23	468	490	468	490	0.98
9	10	3.6e-06	0.00031	21.9	4.2	1	23	496	518	496	518	0.97
10	10	0.00033	0.028	15.8	0.7	2	23	525	547	524	547	0.95

Sequence Information

Coding Sequence: ATGGCCATGAAAAATTTGTGTAGACTTTGTGGTAAAGAAGATTTACTTTCTAAAGATTTACTGCTTGAAGGTAACAACAGTGTTCGGAAAATGGTTCAAGAATTTACCCAAATAATCGTCTATGATTCTGATGATTTACCCACAAAAATTTGCTTGAACTGTGAAGAAAAAATGATAACATTTCAACTGTTTTTGCTGGAGTGTTACAAAGTTCAAGAAATTTTGCAAAAAGCCTTTGGAGAAAAGGATGAAAACTTACATATCAAAACTGAATTCAGTACAAATGTAAAAGATGAGATGACACCTGAAGACATAGTcaGTGCCCTGCAATGTAGTAATGATATTGTAATGTTTGGGGATGAAAATGATGACGATTTTCAAAGTAATAATGATGAAATTGAAGAAGACTTGGATGATGTTACAATAGCTACATTGAAACAAATAAAGAGTGACCAGATAAAGAAATTGACACAACCAAATATAGATCTTGAATCGCTTAATAACATTCTTAGAGCTCCTTCCTTCAAAGTCAAAGATATTGTAAAgttTGATTGCATTTTTTGCAAagaaaaattgaaaaattggTCAATTTTGCATGATCATTACACAGGTCTCCATAAAACTGAGCCAGTGGTGATATGTTTATGTGGATTTGAAATCAGATCAAAAAGTGTGCTTTACAAGCATGTGTCTGACCATAAACAAGAAAgtagaaaaattaagaaagattTTGCAACTGAAGAGGCAAAACAAGATGATTTTCAGTATTCTAATATCAATGTGAAAGATTTTGTTAAGTTTATTTGTAATGAATGTGACCTGACATGCTCGAGCTGGTACAGTTTGAAGGCGCATTGTGAAGATGTCCACAACATCTTGCCCATTGTGCAGTGTAAATGTGGTATTACACTTAAATCGAAATCTGTTATGTACAAACATATTCATGATCACAAGAATCCCAATATTTTGGCATGTGATAAATGCCCAAAAGTATCAAAATCTCAGGCAgctttaaataaacataaaatgagACATGTACCAAAGTCAGAACGAAAATTCTGTTGCTCTGGATGTGACAAAATATTTACTACGAAGGATGCTTTAAAATCTCACGAAAGATCTCATATTCCCATAGAAAATAGGAAGATTTACCATTGTGACATTTGTAACTTGAAGTTCACAACACGTTCGTCCGCCGCGTCTCACAAGAAAGTGGTGCACGATAAGGTGAAGGGTTACGTGTGTGATCTGTGCGGGTATGCGTGCGGTACTAACGGCGAGCTGCGGCAGCATCGCGCCATACACAGCGATGACAAGCCTTTCGTCTGCAACAAGTGCTCTAAGCCTTTCAAAACCTATTCCAACCTGAAGACTCACATGGACACTCATGAAGACACCGCGTACGAGTGCTACATCTGCCAACGAGTGCTGAACAGCCGGCGCACGCTGCGCAAACATCTGCTGGTGCACGAAGACAAGTGTCGCCATGTCTGCTCTTACTGCAACAAGGCTTTCAAACGACGGCAGACTTTAAAGGTCCACATGTACACTCACACAGGCGACAAGCCCCTGACGTGCAAATGGTGCGAGGAGCGCTTCGCGTACGCATCCACTCTGCGCTCCCACCGTCTGCGCTACCACCCCGAGAAGATGTCCCTTGCGGGCCAGCACGAATACAACTCTACGTATGTTGTAATGTCCACTCATGAATACATCAAAAACGACGTGGTAGCTGTAAGTGTCCCCCTAGCTAAGAATGAAGTGGAGGCTATGTAA
Protein Sequence: MAMKNLCRLCGKEDLLSKDLLLEGNNSVRKMVQEFTQIIVYDSDDLPTKICLNCEEKMITFQLFLLECYKVQEILQKAFGEKDENLHIKTEFSTNVKDEMTPEDIVSALQCSNDIVMFGDENDDDFQSNNDEIEEDLDDVTIATLKQIKSDQIKKLTQPNIDLESLNNILRAPSFKVKDIVKFDCIFCKEKLKNWSILHDHYTGLHKTEPVVICLCGFEIRSKSVLYKHVSDHKQESRKIKKDFATEEAKQDDFQYSNINVKDFVKFICNECDLTCSSWYSLKAHCEDVHNILPIVQCKCGITLKSKSVMYKHIHDHKNPNILACDKCPKVSKSQAALNKHKMRHVPKSERKFCCSGCDKIFTTKDALKSHERSHIPIENRKIYHCDICNLKFTTRSSAASHKKVVHDKVKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCNKCSKPFKTYSNLKTHMDTHEDTAYECYICQRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCEERFAYASTLRSHRLRYHPEKMSLAGQHEYNSTYVVMSTHEYIKNDVVAVSVPLAKNEVEAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00700381;
90% Identity: iTF_00703319; iTF_00701363; iTF_00696730; iTF_00698589; iTF_00700381; iTF_00699514; iTF_00706329;
80% Identity: -