Esub009748.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438637.1:2798898-2806411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.092 14.2 0.1 2 23 221 243 220 243 0.92 2 10 0.0079 0.67 11.4 0.3 2 23 269 291 268 291 0.95 3 10 0.034 2.9 9.4 1.6 2 23 315 336 314 336 0.95 4 10 0.00015 0.013 16.8 3.8 2 23 341 362 340 362 0.96 5 10 0.25 21 6.7 1.4 1 13 367 379 367 380 0.93 6 10 0.00048 0.041 15.3 2.8 3 23 400 421 398 421 0.96 7 10 6.3e-07 5.4e-05 24.3 1.3 1 23 428 451 428 451 0.98 8 10 0.0023 0.2 13.1 0.3 1 23 457 479 457 479 0.96 9 10 3.2e-06 0.00027 22.1 1.1 1 23 485 507 485 507 0.99 10 10 5.2e-05 0.0045 18.3 1.5 1 23 513 536 513 536 0.97
Sequence Information
- Coding Sequence
- ATGTCCTCCCATCCCCAATGCCAGTGTTGCTTGACAAGGCCCCCGGATAAACAACTTAAGTCAAAATACACTGTTCTcggaaaaactgaaatttaTGCCGATATGCTGAAGGAATGCTTTGAAATTCACctaaaaaataatgaaattgatAGCGGTATCTGTGAGGTGTGCATCACTCGCCTTCGAGATGCGACAGACTTCAAAAATCAGATTCAGCAGTGTCAGaaagattttaagaaaattatggATTCCattaaagATGAGTCCAAACCTGCAATAAAGGAAGAAATTGATTATGATTCAGACAACGGAGTTTACTTTTTAGATTCAGATCTCAAAGAGGAGCTGTCAGATTTCGAAGGCCTGCCTAGTGATGAAGACAACAAGAAATTGGCTGAGCTGCTAGCTCTCAACTCCCTCAGCGTTAAAcgcaagaagaagaagaaaaatgaTATTGATAAGAAAAGtgAAAAGAAGCACAAGAAGACGAAGCCAATCAAAATCTCTCTCCGAACGTTTGCGAAACTGGATAATATCATCCAACCACAAGGCCTCAGCGTTCTCCGAGTCACAGAGAATCTCAAACACAAGACCAACATAGAAAATATCATCAAATATTCCAACTGCACTCCATTTTCCAACAAAACTCTCTCTGGGATCGTATGCGCTTATTGCAAAGTCACTTATACCAACCCACAAGAGCTCCGAAGCCATATAGAAGCAACACATAAAGACACAGACATAACAGATCATAAGAAAATGGACAGGAACaatttatcatacaaaatagACATAACAGATCTGAAATGCAACATCTGTCAAGCGAATTTCGATCTAATATCAACTCTGAAACAGCATTTAATCAAAGAACATGATATCAAGTTCTATCCAGACGTTAATGATTACGTTTTAGAGTTTAAATTAACTTCTAATGATGTATTGAACTGTGCACTTTGTCATTCTACCTTTGAGACTTTTAAAATGTTACTTCAACATATGAATGGTCACTACAGGAACTGTATATGTGAAATTTGTGATCTaggatttataaataaacatcgATTGAGGAACCACCAACGTACCCATGAAGTCGGTTCGTTCAAGTGTGAATTTTGCGAGAAGATTTTTACTACTCGAGTTAGGAAGATGTGCCATGAAAAATATACGCACAACACTAACGCTAGATACACAACTAATTGTCCACATTGTGAACAGTCTTTCAATAGCTACTATCAACGTAATCGACATATGTATACAGAACACAACACCGTTGCAGCCTCCTACCGCTGCAACATTtgtgataaatcatttattcttaaatctaaATTAACTTCTCATATAAAAAAGGTACATCTAATGGAGAGAAATCATATCTGCCCTGTGTGCGGTCAAGGGTTTTTTATAAAGCAGAGTTTAGATGAGCATATGATAAAACATAATGGTGAAAGAGTGTATAAATGTACAGTATGCTTAAAGGCTTATGCAAGGAAGAAAACTTTAAGAGAGCATATGAGAATTCATAATAATGACAGGCGATTTAAATGCGCTATTTGTGGTATGGCGTTCGTTCAGAAATGTAGTATGAAAAGTCATATGTTATCCAACCATGGGGTTACCTTAGCAGAATATGAACTTAAAGCGGATATGGTGAAAGGTGATGTTTTGGCGCGATAA
- Protein Sequence
- MSSHPQCQCCLTRPPDKQLKSKYTVLGKTEIYADMLKECFEIHLKNNEIDSGICEVCITRLRDATDFKNQIQQCQKDFKKIMDSIKDESKPAIKEEIDYDSDNGVYFLDSDLKEELSDFEGLPSDEDNKKLAELLALNSLSVKRKKKKKNDIDKKSEKKHKKTKPIKISLRTFAKLDNIIQPQGLSVLRVTENLKHKTNIENIIKYSNCTPFSNKTLSGIVCAYCKVTYTNPQELRSHIEATHKDTDITDHKKMDRNNLSYKIDITDLKCNICQANFDLISTLKQHLIKEHDIKFYPDVNDYVLEFKLTSNDVLNCALCHSTFETFKMLLQHMNGHYRNCICEICDLGFINKHRLRNHQRTHEVGSFKCEFCEKIFTTRVRKMCHEKYTHNTNARYTTNCPHCEQSFNSYYQRNRHMYTEHNTVAASYRCNICDKSFILKSKLTSHIKKVHLMERNHICPVCGQGFFIKQSLDEHMIKHNGERVYKCTVCLKAYARKKTLREHMRIHNNDRRFKCAICGMAFVQKCSMKSHMLSNHGVTLAEYELKADMVKGDVLAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00737733;
- 90% Identity
- iTF_00700399;
- 80% Identity
- -