Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: RTase
Assembly: GCA_949316285.1
Location: OX438649.1:16993215-17007166[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.9e-05 0.0034 18.7 0.5 2 23 471 492 470 492 0.97

2 7 3.6e-07 3e-05 25.1 1.6 1 23 498 520 498 520 0.98

3 7 8e-06 0.00068 20.9 0.9 2 23 527 548 526 548 0.97

4 7 6.8e-06 0.00058 21.1 1.0 1 23 554 576 554 576 0.97

5 7 5.4e-07 4.6e-05 24.5 0.7 1 23 582 604 582 604 0.98

6 7 9e-05 0.0077 17.5 5.2 1 23 610 632 610 632 0.97

7 7 5.8e-05 0.0049 18.2 3.1 1 23 638 660 638 660 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.9e-05	0.0034	18.7	0.5	2	23	471	492	470	492	0.97
2	7	3.6e-07	3e-05	25.1	1.6	1	23	498	520	498	520	0.98
3	7	8e-06	0.00068	20.9	0.9	2	23	527	548	526	548	0.97
4	7	6.8e-06	0.00058	21.1	1.0	1	23	554	576	554	576	0.97
5	7	5.4e-07	4.6e-05	24.5	0.7	1	23	582	604	582	604	0.98
6	7	9e-05	0.0077	17.5	5.2	1	23	610	632	610	632	0.97
7	7	5.8e-05	0.0049	18.2	3.1	1	23	638	660	638	660	0.96

Sequence Information

Coding Sequence: ATGGACAGCCTAAGCCTCTTGACGTCTGACATTTTCATAGCTTATCAGGAAAAAAAGTACCTCGTTGGAGTCTTTCTCGACATTGTATCAGCTTACGATAACGTTCTTCTTCCGGTTCTCAGGAGTAAACTCATTCAGCTGAGAGTCCCTGAGAAGATGGTTCGTTTCATCTGTAATATGCTAATGGAAAGATCAGTCATCATCAAATCCCCCGTTGGCCTCCTCCCTCCAAGGACAGTATGGAGAGGTTTACCCCAGGGGTCTGTCCTGAGCCCCTTGTTGTACAGCCTGTACACTTACGACCTTGAACAGTCTGTAAACTCTTTTAGTAATGTTCTCCAATATGCAGATGATATTGCCCTATATCACTCTAGTTCTTCCATTGAAGATGCAGTAACTTGCCTCAATTCTGCTCTTTCTTACCTTGCTGACTGGTTGTTGAATCATGGCCTTTCTCTTTCCGTAGCTAAAAGTTCTGTagttatatttacaaaaaaaaggatCATCCCACCGATTAATGTGTATATTGAGCAGGAGATCATCCCTCAGGCTAATTATGTTAAGTTCCTAGGTGTTACACTGGATTCAAGGATGTCTGGTGTCCCTCACTGCACAGCAATAGTTCAAAAGTGTGAAAAGAACCTAAACACTCTTCGCTCCCTTTCTGGGTACCCCTTAAATCCTCTTTATCAGACTCCCTACGATGCCTTAGTCTATAAACCAAACATTATTCTAGATTTTGGAATAGATAAGAACTCTCCTGATGCTCGTGGAATTTTCAATGCTGAAGTTGCTACAAAATACCCTGGGTGGCACCTAATTTTCACCGATGCCTCTAAACTATCTGCAGATGGGGAGtTTGACTCTGACGATGCAAGGCCGAGAGCTGTTTGCAGTTTCTGTTACCAGAAGCTGTTGAGATGTCACACCTTCTCCAAGATGGTTCAGAAGTCTGAAGAGATCTTCAATAAACTATTGCTCGAGGGACATCAGGCAACCCATGAAAAAATAACTGAGCTCAACCTTGGAACAGCACCACTTCTTTCCGTATCTCCCCTGCAAATCTATACCTATTTGGAAGATAACGAAAATTCTTCTCAAAATGATAATGAAAGTTCTCCAAAATACGAGTATCTACAAATATCAGTGAAACAAGAGAGAGAAGAGTTAGTGAATACAGAAACTGTCAAAAGCGAGGAGTGCATTAAAAATCAGTTTATAGAAGGCAGTGGGAATGTTAATATAGACAGCACAAGTCAGCTGCTTGTAACAGTTAAAGAAGAGAGAATTTCAGACGATGAAGAATTTGTTGAAGTGGAAATAGAAAGAATTCCAGAAAatgaagaaaagaaaataaaacaagaggAAATAGAGGAAACTCCAGTAGAAGATCCACTTGATAATATACTATCCTGCGATAGGTGTGGGAAAGAATTCGAcagtaaaatgaaattaaatggcCACATGAGAATTCACTCGGATAAAAACCCATTTGCCTGTGATGTGTGCGGTAAAAAGTGCAGTCGCAAACCCGATTTGAAAGTACACATGAGAACGCACACAGGGAACAGACCAATACCTTGCAGTGTCtgcaataaacatttttataccaATGCCCTTCTCGACCGACATATGAGAATTCACACAGGTGAAAAACCATTTCCCTGCAAGGTCTGTAAAAAAGAATTTTACAATAAATCTAACTTGGACAGACATGTGGGTACGCACAAGAAAGAGAAGCCATACCCTTGCACCGTGTGTGGTAAAAGTTATACGCAAAAACATGTGCTGATAGTACACATGAGAATTCATACCGGAGAAAGACCATTTCCTTGCGATAAATGCGAGAAACAGTTTTATAGTAAATCACATTTGGTACAACATATCAAACATCACAATGGGGaaaagccatttgcctgcaatgtttGTGATAAACGTTTTTTTCAGAAGTCATATCTCTTCAAGCACTCCTTGAAACATATAAAAGAGGAAAAGGAGAAAGAGAGAAAACGAAACGAAATGCCTCAAGAAAATTTGCCGGCTTCAACGTAG
Protein Sequence: MDSLSLLTSDIFIAYQEKKYLVGVFLDIVSAYDNVLLPVLRSKLIQLRVPEKMVRFICNMLMERSVIIKSPVGLLPPRTVWRGLPQGSVLSPLLYSLYTYDLEQSVNSFSNVLQYADDIALYHSSSSIEDAVTCLNSALSYLADWLLNHGLSLSVAKSSVVIFTKKRIIPPINVYIEQEIIPQANYVKFLGVTLDSRMSGVPHCTAIVQKCEKNLNTLRSLSGYPLNPLYQTPYDALVYKPNIILDFGIDKNSPDARGIFNAEVATKYPGWHLIFTDASKLSADGEFDSDDARPRAVCSFCYQKLLRCHTFSKMVQKSEEIFNKLLLEGHQATHEKITELNLGTAPLLSVSPLQIYTYLEDNENSSQNDNESSPKYEYLQISVKQEREELVNTETVKSEECIKNQFIEGSGNVNIDSTSQLLVTVKEERISDDEEFVEVEIERIPENEEKKIKQEEIEETPVEDPLDNILSCDRCGKEFDSKMKLNGHMRIHSDKNPFACDVCGKKCSRKPDLKVHMRTHTGNRPIPCSVCNKHFYTNALLDRHMRIHTGEKPFPCKVCKKEFYNKSNLDRHVGTHKKEKPYPCTVCGKSYTQKHVLIVHMRIHTGERPFPCDKCEKQFYSKSHLVQHIKHHNGEKPFACNVCDKRFFQKSYLFKHSLKHIKEEKEKERKRNEMPQENLPAST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -