Esub009791.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438637.1:3135312-3140201[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.052 4.5 8.8 0.2 2 23 43 64 42 64 0.93 2 24 0.2 17 7.0 0.1 2 23 93 115 92 115 0.94 3 24 0.014 1.2 10.6 0.8 2 23 141 162 140 162 0.96 4 24 2.6 2.2e+02 3.5 0.3 1 21 166 186 166 189 0.71 5 24 0.12 9.8 7.8 1.8 3 22 195 214 193 214 0.94 6 24 0.0073 0.63 11.5 5.7 1 23 221 244 221 244 0.97 7 24 0.024 2 9.9 4.0 1 19 251 269 251 270 0.97 8 24 0.77 66 5.2 0.3 1 23 299 321 299 321 0.96 9 24 1.3 1.1e+02 4.5 0.0 2 23 350 372 349 372 0.93 10 24 7.9 6.8e+02 2.0 0.2 3 23 399 419 397 419 0.83 11 24 0.0082 0.7 11.4 0.4 1 23 423 446 423 446 0.95 12 24 0.17 15 7.2 2.6 1 22 450 471 450 471 0.93 13 24 0.00031 0.026 15.9 0.7 1 23 478 501 478 501 0.95 14 24 0.0086 0.73 11.3 1.1 1 21 508 528 508 529 0.93 15 24 0.81 69 5.1 0.4 3 23 558 578 556 578 0.93 16 24 1.2 1e+02 4.6 0.0 2 23 607 629 606 629 0.90 17 24 0.19 16 7.1 0.4 3 23 656 676 654 676 0.95 18 24 0.0057 0.48 11.9 0.2 1 23 680 703 680 703 0.94 19 24 0.14 12 7.5 2.2 1 22 707 728 707 728 0.94 20 24 0.067 5.7 8.5 2.2 1 23 735 758 731 758 0.89 21 24 0.011 0.93 11.0 0.3 1 23 765 788 765 788 0.95 22 24 0.17 15 7.2 2.6 2 23 794 815 793 815 0.95 23 24 0.00021 0.018 16.4 0.6 1 20 821 840 821 843 0.94 24 24 7.6e-05 0.0065 17.8 1.6 1 23 849 872 849 872 0.97
Sequence Information
- Coding Sequence
- ATGAAAAGCGAGTGGTCAAgatgtttcttttcttttctagAAATCAGAAAAATCGCGAAGAAGAATGCCGAGATCGTGGTAAAGTATACAACAGTGTATCCGTTCAGGTCGCAAGGACCAAACTTGATCTGTGTGTACTGCTACAAAGAATTCCAAAGTCCCGAGGACTACAGGGTCCATTCTGACTCTCATATTAATGACAACTTGTCCACTGCCTTCGGTCACCTCATAGGGAAAACAGGTAGAGAATACCTCAAAGTTGACTGCGTAAACCTAAGATGCAAGTTATGTAACCAGGCTTTCGACGATATCCCTGGTATAGCTCAACACCTCAAATCTGAACATGAGGACGTGGCGGAAAGCCTCAACCTAGACTATGAAGTAGGGGTGCATCCCTATAGATTGTTTAAAGAAAAATGGACCTGCATGTTGTGCCATAAGAAACTCCCAAGCTTGCCAACGCTTGTGAGGCACATGTCGTCTCACTTCGCAGACCATGTTTGCGATATCTGCGGTAAATGGTTTCTGAAAGTTAGTGCCATGAATGACCACGTCAAGTTCATCCACTCGGGGAAACAAATCTGCAGGAAATGCAATAAGGAATTCCCCACACACAAAGAAAAGAGGGAGCACCTAAAAACTTCTACGAATTGCATGCCGTTTACCTGTCACCAATGCGATTTGAGATTCTGCTCTTGGGAGAAGAAGATGAAACATATGACTAGCGTTCATAACGTTGATGCACCTCAGTACACTTGCAACGATTGCAAGATCGTCTTCTCCAACCGGAAAAGTTTCTATACTCATTGTCAACTCAGAGCAATCGCGAGAAGGAATGCCGAGATCGTGTTAAAGTATTCGACAGTGTGCCCGTTCAGGTTGCAAGGAAAAATCTTTATATGTGTGTACTGCTGCGAAGAATATGAAAGTGCCGATGAGTACAGGATCCATATAGACTCTCATCTTAATGTAAACGTGTCTACTGCCTTCGGTCACCTTGGAGGGGCTAGATGTAGGGAATACCTCAAAGTTGACTGCGTTAACCTTAAATGCAGGCTGTGTAATGAGCCCTTCGATGCCCTCCCTGACATAGCTCAACATCTCAAATCTGAACATGAGGACGTGGCGCACAGCCTTGACTTAGAGAGCGAATTAGGGTTGCATCCCTATAGATTGTTGAAAGACAAATGGTCCTGCATGGTGTGTTACCAGAAGCAGCCGAGTTTGATAACGCTTGTGAGGCACATGTCGTCTCATTACGCGGACTATTTTTGCGATATCTGCGGTAAAGGCTATCTGAACCTCCAGAACTTGAATCTGCATGTCAAATACAGCCACTCAGCGAAACATATGTGCAGGAAATGCAAGAAAGAATTCGCTACGCTGAACGAAAAGAAGGAACACCAAAAAAGATCAACGAAATGCATGCAGTTTGCATGTGTCCATTGCGGGGAGAGATTCTCCTCTTGGGAGATGAAGATCAAACATATGACTAGCGTGCATAACGTTGATGCGCCTCAGTACCCTTGCACCGATTGCAAGATCGTCTTCTCCAACCGGAAAAGATTCTATACTCACTATCAACTCAGGGCAATCGCGAAAAGGAATGCTGAGATCGTGTTAAGATATTCGACAGTGTTTCCGTTCAGGTTGCAAGGACAAAACTTGATATGTGTATACTGCTGCGAAGCATTTGAAGATCCCGACGAGTACAGGCAGCATTTTGACTCGCATCCTAATGTAAACGTGTCCACTGCCTTCGCGCACCTCAGAGGCGCTACAGGTAGAGAATACCTCAAAGTTGACTGCGTAAACCTAAGATGCAGGATATGTAACGAGCCGTTCGATGCCCTCCCTGATATAGCTCAACATCTCAAACTTTATCATGAGGACGTAACGGATAGCCTCAACTTAGAATGTGAAGTAGGAATGCATCCCTATCGATTATTGAAAGACAAATGGGCCTGCATGTTGTGCTACATGAAACTGCCGAGCTTAACAAAGCTTACGAGACACATGTCGTCTCACTACGCGGACTATGTTTGCGATGTCTGCGGTAGAGGCTTTCTGAACATAACAAACTTGAAAATTCACGTCAAGTTCACCCACTCGGAGAAACACATCTGCAGGAAATGCAATAAGGAATTCTTCACAGCGAGAGAAAAGAAGGAGCACCTAAAAACGACTACGAAATGCATGCAGTTCGCCTGTATCCATTGCGGGGAGAGATTCTCCTCTTGGGAGATGAAGATCAAACATTTGACCAGCGAGCATAACGTTAAGGCGGCTAATTACCCATGCACCGATTGCGAGCTGGTCTTTCCCAACCGGAAAGTCTTCTACAACCATTACATTGTAACGCACACTGACCAAGCGCTCAAGTGCTCCTGCTGTGACAAGaagtttttgaataaaactcTGCTAGAAGACCATCTGATCACTCACACCAACGAGAAGCCATTTGAGTGCTCGGTTTGTTCGAAGTTATTTACGAGGAACAAAGCGCTGCGTCAGCACATGTGGATCCATAGTGAAAAGAAGAGATTTACTTGTGTTTTATGCGATAGGTCATTCAATCAGAAAGTTAGTTACTTATCTCATATGAAAAGTACACATCCTAATACGTCGGTATAA
- Protein Sequence
- MKSEWSRCFFSFLEIRKIAKKNAEIVVKYTTVYPFRSQGPNLICVYCYKEFQSPEDYRVHSDSHINDNLSTAFGHLIGKTGREYLKVDCVNLRCKLCNQAFDDIPGIAQHLKSEHEDVAESLNLDYEVGVHPYRLFKEKWTCMLCHKKLPSLPTLVRHMSSHFADHVCDICGKWFLKVSAMNDHVKFIHSGKQICRKCNKEFPTHKEKREHLKTSTNCMPFTCHQCDLRFCSWEKKMKHMTSVHNVDAPQYTCNDCKIVFSNRKSFYTHCQLRAIARRNAEIVLKYSTVCPFRLQGKIFICVYCCEEYESADEYRIHIDSHLNVNVSTAFGHLGGARCREYLKVDCVNLKCRLCNEPFDALPDIAQHLKSEHEDVAHSLDLESELGLHPYRLLKDKWSCMVCYQKQPSLITLVRHMSSHYADYFCDICGKGYLNLQNLNLHVKYSHSAKHMCRKCKKEFATLNEKKEHQKRSTKCMQFACVHCGERFSSWEMKIKHMTSVHNVDAPQYPCTDCKIVFSNRKRFYTHYQLRAIAKRNAEIVLRYSTVFPFRLQGQNLICVYCCEAFEDPDEYRQHFDSHPNVNVSTAFAHLRGATGREYLKVDCVNLRCRICNEPFDALPDIAQHLKLYHEDVTDSLNLECEVGMHPYRLLKDKWACMLCYMKLPSLTKLTRHMSSHYADYVCDVCGRGFLNITNLKIHVKFTHSEKHICRKCNKEFFTAREKKEHLKTTTKCMQFACIHCGERFSSWEMKIKHLTSEHNVKAANYPCTDCELVFPNRKVFYNHYIVTHTDQALKCSCCDKKFLNKTLLEDHLITHTNEKPFECSVCSKLFTRNKALRQHMWIHSEKKRFTCVLCDRSFNQKVSYLSHMKSTHPNTSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -