Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438637.1:1430227-1442698[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00021 0.018 16.4 0.0 1 23 246 269 246 269 0.92

2 10 0.051 4.4 8.9 0.3 2 23 295 317 294 317 0.94

3 10 0.012 1 10.8 1.3 1 23 340 362 340 362 0.97

4 10 9.3e-05 0.0079 17.5 3.7 1 23 366 388 366 388 0.98

5 10 0.099 8.4 8.0 10.1 1 23 393 416 393 416 0.96

6 10 0.00085 0.072 14.5 0.8 3 23 425 446 423 446 0.93

7 10 1.6e-05 0.0013 19.9 1.2 1 23 452 475 452 475 0.98

8 10 4.3e-05 0.0036 18.6 0.6 2 23 482 503 482 503 0.97

9 10 8.8e-07 7.5e-05 23.9 2.3 1 23 509 531 509 531 0.98

10 10 0.0005 0.043 15.2 2.3 1 23 537 560 537 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00021	0.018	16.4	0.0	1	23	246	269	246	269	0.92
2	10	0.051	4.4	8.9	0.3	2	23	295	317	294	317	0.94
3	10	0.012	1	10.8	1.3	1	23	340	362	340	362	0.97
4	10	9.3e-05	0.0079	17.5	3.7	1	23	366	388	366	388	0.98
5	10	0.099	8.4	8.0	10.1	1	23	393	416	393	416	0.96
6	10	0.00085	0.072	14.5	0.8	3	23	425	446	423	446	0.93
7	10	1.6e-05	0.0013	19.9	1.2	1	23	452	475	452	475	0.98
8	10	4.3e-05	0.0036	18.6	0.6	2	23	482	503	482	503	0.97
9	10	8.8e-07	7.5e-05	23.9	2.3	1	23	509	531	509	531	0.98
10	10	0.0005	0.043	15.2	2.3	1	23	537	560	537	560	0.97

Sequence Information

Coding Sequence: ATGCAACGCGTATGCCGGTGCTGCCTTGCCGAAGGGCCTCACAAAGATCTGATGACACCCTACACATTCATGGGGAAAAAGGAAATTTACTCTGCTATGCTACTGGAGTGCTTCAACATTATTGTGAGTATGATACCGCTACCAAACACAGCGATCTGCGATGATTGCATCTCCGCGCTACGGAGCGCCCTCGACTTCAGAACGAAGGTCCAGAACGCGGAGGAATCGCTGATGCAGAAAGGAAAAGAGCTGTACTCTGGTAATGATGATTTAAATGGACAGTTTACTCAAATACTTATCAGAGATGTAAAAGAGTTATTGGAGATAAAAGTGGAGCCAAAACAAGACAGCGACTTTTCGGAATCCGATGACTATTTCTTGGCGGACACAGTTAAAGAAGTTCCTATATACGACattaaaactgaaaacaaaGAGACGATCAGAAAGAAAGTGACGTCGAAAGTGACAAAGCTCAAGAAACCTAAAACAGAAGCCTGGACCGACAGTAAAGTGCAGAATATACTGGCAAGATTAACTCCTTCTGTGGATTCCTGTGAGCTGACAATCAAAAGGAAAAACCCCAGAAAACTAACGCGAAAGATTCAAGAACCAACGAAAATGAACGCCTCCTGGACATCAGAGAAATTTAACGACAAATTTAAACTGAAAGACaattttataactattttaagaTACTCCAACGCTATGCCTTTTAAAAACAAGTCGCTTCTAGGATTTATATGTGCGTACTGCGACGCGGCGTTCCCAGACCCGGCCAACTTAAGAAACCACGTAGAAGAAGACCACAGAAAAGACAGATTAAAACTGAAATTTAAGAAAGCACTATCTGAATACAGCTTAAAGCTAGACATAACAGGCCTAAAATGCACCTTATGCGACGAGGAGCTCGAAAACTTAACAACACTAAAAGATCACTTAGTCAAAACacatgataaaataatacacagCGATGTTAAGGACTTAATGatgcaatttaaattaaaaaaaggtgAAGTTTATGACTGCGCTATGTGTTCATCGACATATGAAACGTTCAAGACATTGAAGCAACATATGAACTTGCATTATTGTAACTATTGCTGTACTAAATGTGATGCAGCTTTTGCAACGAAGAGATCTTTAACTGCTCACTTGCATACCCACCAAGAGGGTAGTCACAAATGTGATTACTGTGAAAAAGTATTCTCAAGCCGCAGTAAAAAGCATTATCACCACAAAATGAAACATCTCGGTGCAAGAAACATTTCCAACTGCCCGTACTGCAACGAGTCCTTCAGAAGCTATTACCAACGGAATCAACACCTAGTTAAAATCCACAACACAGAAGCACAATACAAATGCAACGTATGCAGTAAGGTGTTTATTCTAAAGTCTTTACTAATGTATCATATAAAGAAAAATCATTTAATGGAACGGAACGCACAATGTGCGGAGTGTGGATATAAATTCTTCAGTAAGAAAGCCCTGAAAGCGCATATGGTGAAACACACCGGAGAAAGAAACTATGCTTGCGAGATGTGTCACAAGTCATATGCAAGGAAGTATACACTGCGGGAACATATGAGGATACATAATAATGATAGGAGATTCAAATGTGAGGTTTGTGCGATGACTTTTGTCCAGAAGTGTAGTTTGAAAAGTCATCTGTTGTCCAATCATGGGATAAGCTTGGCAGCGAGTGAGATAAATTCTGTAGATGTTCCTATTGCTATGTAA
Protein Sequence: MQRVCRCCLAEGPHKDLMTPYTFMGKKEIYSAMLLECFNIIVSMIPLPNTAICDDCISALRSALDFRTKVQNAEESLMQKGKELYSGNDDLNGQFTQILIRDVKELLEIKVEPKQDSDFSESDDYFLADTVKEVPIYDIKTENKETIRKKVTSKVTKLKKPKTEAWTDSKVQNILARLTPSVDSCELTIKRKNPRKLTRKIQEPTKMNASWTSEKFNDKFKLKDNFITILRYSNAMPFKNKSLLGFICAYCDAAFPDPANLRNHVEEDHRKDRLKLKFKKALSEYSLKLDITGLKCTLCDEELENLTTLKDHLVKTHDKIIHSDVKDLMMQFKLKKGEVYDCAMCSSTYETFKTLKQHMNLHYCNYCCTKCDAAFATKRSLTAHLHTHQEGSHKCDYCEKVFSSRSKKHYHHKMKHLGARNISNCPYCNESFRSYYQRNQHLVKIHNTEAQYKCNVCSKVFILKSLLMYHIKKNHLMERNAQCAECGYKFFSKKALKAHMVKHTGERNYACEMCHKSYARKYTLREHMRIHNNDRRFKCEVCAMTFVQKCSLKSHLLSNHGISLAASEINSVDVPIAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00703303;
90% Identity: iTF_00697642;
80% Identity: -