Esub001995.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- zfy1
- Assembly
- GCA_949316285.1
- Location
- OX438628.1:15516978-15529211[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00073 0.062 14.7 3.3 1 23 64 87 64 87 0.91 2 12 1.9e-06 0.00016 22.8 0.9 2 23 192 213 191 213 0.96 3 12 2.6e-06 0.00022 22.4 2.9 1 23 219 241 219 241 0.99 4 12 0.001 0.088 14.2 4.0 1 23 247 269 247 270 0.96 5 12 0.33 28 6.3 0.9 5 23 283 301 281 301 0.97 6 12 0.007 0.6 11.6 1.1 3 23 308 329 307 329 0.96 7 12 0.0045 0.39 12.2 0.2 2 23 346 366 345 366 0.97 8 12 7.1e-05 0.0061 17.9 0.3 1 20 372 391 372 394 0.93 9 12 0.00044 0.038 15.4 0.5 1 23 402 424 402 424 0.98 10 12 0.002 0.17 13.3 7.2 1 23 430 452 430 452 0.98 11 12 2.8e-06 0.00024 22.3 1.1 1 23 458 482 458 482 0.97 12 12 0.00018 0.016 16.6 5.5 1 23 488 510 488 511 0.96
Sequence Information
- Coding Sequence
- ATGATGCTGAATGAAGATTCCAGCATTCTTTATTCCACGTCGTGGTTTCAGATCTACCCTGAGGCAGTCCCCACGGAGGCCTATGACTTGATGGCCCGCGAAAGCTGGGAATCGGACGGGTCAGAGCTGGATGTTGCAGAGAGAAGGGAAAATCTCGCGGATGAACTATCGTACCCCAAGCCGCGCAGACACTGCTGCCCGACGTGCGGCACTAAGTTCACGTCGCTCAAGGAGCTGCGCGTGCACAAGGCCAACGAGCACGTGACGCAGACCGCGCCCAAGCAGACCTACAGCCGCCTGCTCACCGCCAGGAGCATCAAGAAGGAGGAGAAGCCGGATCTGACTTGTGCAGCCAACATCCTAGCTATAGACTCCAAAGGAAGCATCACCTCAACTATCCTGGAAGTGTACGAGCAGGACCCCTTAGACGAGGCTAAGCCGAAACTGAGCAATCTAAGCTCCCTGCTCAGCAAGGACGTGAAACGGAAACGTAGAAACTTTGTGTGTCCGACGTGTAAAGTTAATCAGCTGAACGAGACCGCGTTCACAGCGCATCTAAAGATCCACCCTCTAGAATGCCTGACGTGCGGGAAATTCTTCACGCGGCGCGCCAATCTGCAGCTCCACGTGAAAACGCACCTAGGCATCAAGGAGTTCAAATGCGACGTCTGCGAGAAGCGTTTCACGACCCGTCAGAAGCTCCGCGAACATCAGAACACGCACACCGGCCGAGCGCCTTACAAATGTACCCTCTGTGACGACACCTTCCGACGGTACTCCAACATGATTCAGCACCGGGACCGTCACCACTTACACAAGCGAGTGAaaacccgcgacttcgtctgccaCTGCGGCGCCGTCTTCCAGTCGCGCGCCAAGTTCCTCTGGCACAAGGAGACGCACGCCGACAAGCCGAAGGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCGGCGTCGCTCACGCGCCACGTGAGGCGCTCGCATAACGAGCTCTTCCAGAATtctaataataagaataagaagGATAATGTTACGTGTCCGGTTTGTAAACAGATATACCTCCGCTCGAACCTCCGCATCCATCTACTGACGCACAGCGGCAAGCGCCCCTACGCCTGCGTCGTCTGCAACAAAGCATTCACCACCAAATGGAACCTGAAGCTCCACCGGTGGGTCCACATGAGTCGCTCAGCCAAGCCCTTCAAGTGCACCCTCTGCAAGGGCGCCTTCATAAGACAGACCGAGTATATATCCCACATGAACGCTCACAAATCCGTCCGGCCCTACACTTGCAATTACTGCGGATGCCAGTTTATTAGAAAATATAACTGTCAAAGGCACGTTAGAGAACACGAGATGGCGAAAAAATTCGTCTGCAACATACCAGAGTGCGGGAAATCCTTCCATAGGAGTTACTACCTCTCTGAACATATGAAAGTGCATAGCGGAGTGCGCCCGTTCTCATGTGACATTTGTGACAAGACTTCCAGTAATAAGTCCAACCATAACAAACATATGAAGATACATCACGCGAGGGAGATGATAGCGGCGGAAGCCTAG
- Protein Sequence
- MMLNEDSSILYSTSWFQIYPEAVPTEAYDLMARESWESDGSELDVAERRENLADELSYPKPRRHCCPTCGTKFTSLKELRVHKANEHVTQTAPKQTYSRLLTARSIKKEEKPDLTCAANILAIDSKGSITSTILEVYEQDPLDEAKPKLSNLSSLLSKDVKRKRRNFVCPTCKVNQLNETAFTAHLKIHPLECLTCGKFFTRRANLQLHVKTHLGIKEFKCDVCEKRFTTRQKLREHQNTHTGRAPYKCTLCDDTFRRYSNMIQHRDRHHLHKRVKTRDFVCHCGAVFQSRAKFLWHKETHADKPKACLYCSDKFVHAASLTRHVRRSHNELFQNSNNKNKKDNVTCPVCKQIYLRSNLRIHLLTHSGKRPYACVVCNKAFTTKWNLKLHRWVHMSRSAKPFKCTLCKGAFIRQTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKFVCNIPECGKSFHRSYYLSEHMKVHSGVRPFSCDICDKTSSNKSNHNKHMKIHHAREMIAAEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01161623;
- 90% Identity
- -
- 80% Identity
- -