Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: ham
Assembly: GCA_949316285.1
Location: OX438629.1:9576040-9594761[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.041 3.5 9.2 0.1 2 23 112 134 112 134 0.93

2 9 0.0033 0.28 12.6 2.6 2 23 142 164 141 164 0.91

3 9 2e-08 1.7e-06 29.1 0.1 1 23 170 193 170 193 0.96

4 9 5.9e-06 0.0005 21.3 1.1 1 23 199 221 199 221 0.95

5 9 2.4e-05 0.002 19.4 7.0 1 23 227 249 227 249 0.99

6 9 0.0004 0.034 15.5 0.4 2 21 257 276 256 277 0.94

7 9 1.4e-08 1.2e-06 29.5 0.7 1 23 671 693 671 693 0.98

8 9 5.2e-07 4.4e-05 24.6 1.7 1 23 699 722 699 722 0.97

9 9 5.6e-06 0.00048 21.3 3.3 1 23 728 750 728 750 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.041	3.5	9.2	0.1	2	23	112	134	112	134	0.93
2	9	0.0033	0.28	12.6	2.6	2	23	142	164	141	164	0.91
3	9	2e-08	1.7e-06	29.1	0.1	1	23	170	193	170	193	0.96
4	9	5.9e-06	0.0005	21.3	1.1	1	23	199	221	199	221	0.95
5	9	2.4e-05	0.002	19.4	7.0	1	23	227	249	227	249	0.99
6	9	0.0004	0.034	15.5	0.4	2	21	257	276	256	277	0.94
7	9	1.4e-08	1.2e-06	29.5	0.7	1	23	671	693	671	693	0.98
8	9	5.2e-07	4.4e-05	24.6	1.7	1	23	699	722	699	722	0.97
9	9	5.6e-06	0.00048	21.3	3.3	1	23	728	750	728	750	0.98

Sequence Information

Coding Sequence: ATGGTGAGCGTAAACAGAAAACCCTCTATCAAGAAGCCTTGGAGGGTATTCTTTGAGGTTCTTGGTAAGAAAGGCGTTCGTGTTTGGCTTGATGGGACCAACGAGAAGTCAAATTGGTTGAAGATGGTTCGCTCTACCAACTTCCCCAGTGACGTCAATGTGCAACAAATCTTGAATGGTGGACAAGTGTGGTACAAGGTGGTCCGAGACATTCCATCCGGCCAGGAACTGCTTCTGGGGCCCAGGACACCTTTACCTCTGCAAGACATCAATCGATCACCAATTCCAGATGATATCAGGACAGAAGACGAGGACCGCGAAGACACAGAGCCTAGGTGTTCTTTCTGCGACGAGCCGTTTCCCAACATCGAAGCGCTCGACCACCACCTGATCCAGGCTCATGCTCAGCCAGCGGCCGCTTGCCACTGTGAACTTTGCAACCGTTCTTACAGTTCAAGGGCGTTGCTGCTGCGTCATCGCGCTCTCGCACACAGCAACATCAGGAAATACCCTTGCGAGAACTGTCCTAAGGTATTTACCGATCCTTCCAACCTCCAGCGCCACATCCGAGCGCAGCACAAGGGCGCCCGCAGCCACGCCTGCCCAGAGTGCGGGAAGACCTTCGGAACAGCCTCCGGCCTGAAGCAGCATACACACATCCACTCCAGCATCAAGCCATTTCAGTGCAAGGTTTGCTTTAAGtcTTACACCCAGTTCTCCAACCTTTGCCGCCACAGACGCATGCACGTTGCATGCCAATCTGCCATCGAGTGCGGCAAATGCGGTCAGTCTTTTAACTCTTACGTGTCTCTGACCAAGCATAAGAGATTTTGCGACACCGCTTCTGCCAGTTCTGTTGGACTTAGAGGACAAATGCCACAGGGACTCCCGCAGATTCCAACTCTACCAAACGTCGGAATGCCGAACCCGAACGGGGCCCATAACCCCTTCTCAATGTATCGGCCAGGCCTTCCTCTGCCATACAACACCTTCGCTCACTATCCAGCTGTACTCCAAACCTTATCAGCTGCGGCTGCGGCTTGTCCACCTGATTTCTTGAACCCGCTGTACTTCAATGTTCAAGGAGCAAGGCTCGCTATGGAGCACGATATGGCAATGAATAGTGCTAATTTAGCAAAGCAGCAAGAAGGACGCATGTCAGTAAAGAGTATTGATAGCTCTTCACACGATGAAACAAGAAAGTCAAAAGATTTGGATTATGACTCTAACAAAGGCGAAAACACTGACAGAGTAACACCAAACAATTCAATGAGCTTGTACCCTAAACATTCTCCACTGTCGAACGAGGATACAACATCTCAAAATCGTCCTTCTCCAATAATGCCGATGCAGACATCCATACTGCCATACAATTTCCCTAGAGATGAACATAAGAGGAAGTCGCCGTTCACGTTTTCGCTGACCCATAATAACAATGAAGTCCAAGAGAGGAAATCAGTTTCTCCATTACCTACAGATTTATCAAAAAATGCGGAAGAGGACAAAATTTCAGAGATCGACCCTGAGGAGATAGACGATAAGAAAGACGAGAGTGACCAGCCACTTGATTTGTCAGTTTCTCGAAAACAAAGTGACAAGGATTCCGAAGCTGATGCCGACGATCGTTCCTTTCGTCACTCTGTCAAATCTTATTCACCACCAGAAAGTCCCGTAGAAAGGAGCAAGACTCCCGAGAACGACACCATGGACGTCGATGTGGAAGCCGTAGAGCCAAAGCGAGATGATTCCCCGCCGCAGCTAGTTTCAACGCCGCTCGCCTTCCCTATGCCCGTTCATCCCTCGCACAATCTCATCGATGCTATGTACCGTCCTCGATTTCCGTCCTTTCACTCAGCAGAGTCCCTCCTGAACTCCGCTCACTCGCCCTACGTCCCGAGCCCGTTTAATTTTTTATCCCCCCTTCTCAACACTGAGGGCCCAGACCGACAGCCTAGCGCATACGCTAAGTTCCGCGAGCTGAGCGCTGGCGCTGGCAAGGCTCGGGATCGATACGCTTGCAAATTCTGCGGGAAAGTGTTCCCGCGGAGCGCGAATCTGACGCGTCATCTGCGCACACACACCGGAGAACAGCCCTACAAGTGCAAGTACTGCGAGCGCTCGTTCTCGATCTCATCCAACCTGCAGAGACACGTACGGAACATTCACAACAAGGAGAGACCGTTCAGATGTCCCCTTTGCGATAGATGCTTCGGGCAGCAGACGAACCTAGACCGGCATCTGAAGAAGCACGAGGCGGAGGGCGGCGACTCGCCGAGTTCCGCGGATACGGAGCGCGAGGATACGTATTTCGATGATATAAGGTCTTTCATGGGGAAGGTGACGTGTTCCCCGCCGGCGTCGTCCCCGCTGGCGCCGTCCCCGCACCCCGCACCCCCGCACCGCTCGCTCGCCATCTCCACATAG
Protein Sequence: MVSVNRKPSIKKPWRVFFEVLGKKGVRVWLDGTNEKSNWLKMVRSTNFPSDVNVQQILNGGQVWYKVVRDIPSGQELLLGPRTPLPLQDINRSPIPDDIRTEDEDREDTEPRCSFCDEPFPNIEALDHHLIQAHAQPAAACHCELCNRSYSSRALLLRHRALAHSNIRKYPCENCPKVFTDPSNLQRHIRAQHKGARSHACPECGKTFGTASGLKQHTHIHSSIKPFQCKVCFKSYTQFSNLCRHRRMHVACQSAIECGKCGQSFNSYVSLTKHKRFCDTASASSVGLRGQMPQGLPQIPTLPNVGMPNPNGAHNPFSMYRPGLPLPYNTFAHYPAVLQTLSAAAAACPPDFLNPLYFNVQGARLAMEHDMAMNSANLAKQQEGRMSVKSIDSSSHDETRKSKDLDYDSNKGENTDRVTPNNSMSLYPKHSPLSNEDTTSQNRPSPIMPMQTSILPYNFPRDEHKRKSPFTFSLTHNNNEVQERKSVSPLPTDLSKNAEEDKISEIDPEEIDDKKDESDQPLDLSVSRKQSDKDSEADADDRSFRHSVKSYSPPESPVERSKTPENDTMDVDVEAVEPKRDDSPPQLVSTPLAFPMPVHPSHNLIDAMYRPRFPSFHSAESLLNSAHSPYVPSPFNFLSPLLNTEGPDRQPSAYAKFRELSAGAGKARDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFRCPLCDRCFGQQTNLDRHLKKHEAEGGDSPSSADTEREDTYFDDIRSFMGKVTCSPPASSPLAPSPHPAPPHRSLAIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00705315;
90% Identity: iTF_01161599;
80% Identity: -