Esub008741.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia subumbrata
Gene Symbol
-
Assembly
GCA_949316285.1
Location
OX438635.1:12242418-12260863[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.036 3.1 9.4 4.9 1 21 560 579 560 580 0.93
2 13 5e-06 0.00042 21.5 1.0 2 23 610 631 609 631 0.97
3 13 0.0019 0.16 13.4 0.5 1 23 637 660 637 660 0.97
4 13 5.3e-06 0.00045 21.4 0.7 1 23 666 689 666 689 0.97
5 13 9.3e-05 0.0079 17.5 1.0 1 23 694 716 694 716 0.97
6 13 6.6e-06 0.00056 21.1 1.7 1 23 722 744 722 744 0.96
7 13 4.7e-05 0.004 18.4 2.3 1 23 755 777 755 777 0.99
8 13 0.00061 0.052 14.9 1.3 1 23 782 804 782 804 0.98
9 13 4.6e-06 0.00039 21.6 0.9 1 23 810 832 810 832 0.97
10 13 8.5e-05 0.0072 17.6 1.4 1 23 838 860 838 860 0.97
11 13 3.5e-07 3e-05 25.1 0.5 1 23 866 888 866 888 0.98
12 13 0.061 5.2 8.6 10.0 1 23 894 917 894 917 0.97
13 13 1.9e-06 0.00016 22.8 3.5 2 23 923 944 922 944 0.97

Sequence Information

Coding Sequence
ATGGTAGAAGCAAAATTTAGTGTAAGAATATCCAGACTGAGATGTGACAATGGAGGAGAATACGTGaataaacaaacgaaaatattttGCGAAACGAAAGGAATCCAAATTGAAAACACAATTCCATACTCACCTCAACAAAATGGAAAAGCAGAAAGGTTGAATAGAACTATAGTAGAAAAGGCAAGAACCTTACTGGTAGATTCgggttttgagaaaaatatgtgGGGTGAAGCTGTCTATGCATCGATATATGCAATCAACAGAATACCCACTGTAGAAAAGAAAATTCCAGCAGAAATTTGGTTTGAAAGAACACCCGATTATGCCAGATTTAGGATATTTGGTTCAGAAGCTTATgcgtatataaataaagagacAAGAGAAGGTAAGATGTCAGAAAAGTCAAGACTATTGTATTTCATTGGTTACTGCAATAATGGTTATAGATTATGGGATGGTCAGAACAAGAAGGTTGTATCATCTAGAGATGTTATTGTTAATGAACAACCATGCCATAAAAATACACTATATATTGACCCAAAGTTTTTAGAACAGACTTCAGAAATTCAGGAGAATATAACAACAGAACAAAACTTGGAAAATCAGGAAAATGCAACCACAGAACAAAACGCTGAAGTTAATAAACCAGGAGTGGAAAACTTATCAAGTATTGATAAAAGAACTAGAAGAAGACCAGTccatttacaagattatgaaTGTGATGATTTTCATGATTGTGATTTTACAGCCTTTAACATAACAGAAAACGTACCAAAAACGATGAAAGAAGCTTTAGAATCAAATGAAAAAGAAGAATGGATAAAAGCTGTACAGGCAGAATTAGATTCCCTAGAAAAACATTCAACTTGGACAATAGTCGAGAAAccaaaagataagaaaattattcacAGTCGTTGGGTTTTTAGAAAGAAGGATCAGAACATTTACAAGGCAAGATTGGTGGCAAAAGGTTATGAATCTAATGAATGGTCAGACACTTACGCACCTGTGGATTGGGCTTCTGATTGTAATGATAGAAAGAGTGTTTCGGGATTTTGTATGACTCTATTCGGTAATATAGTTTTATGGGCTTCTCGTAAACAAAAGACTGTTGCTCTGTCTACCGCGGAAGCAGAATATGTCGCTCTGAGTTCACTCGTATCAGAAGCGATATGGTTTAGAGGTTTAGTTAGTGACCTAAATcccAATCTTAGTTTGTTAGAGTTCAGTCTTCCGGAGAGCATGTGCTACGTGTGTTACTGGAAGCTGCAGAGATGTAGGAGGTTCGTGCACATGGCGCACAGATCAAACAACATCCTGCAGGATATTGCCAGCATTGGGCTCGAGgtAACACAAGAAACCTTGGCGTTATTAAACATAAGAACTATTCAAAATCTGACTATACAGACAAAAATAACCTCTACAGACCTTGATACTGAAGGAATCATCAAACACATTGCTGTGAAGGAGGAATTTAATGTAGAAAATCATGATGACATATTTACAGCTGAAGATAATGATGAATATATTCCAAGCCGTGATGTAGAACTGAACGATGTAGCGAAAACAGAAGATACTGCACATGATGCTGATATAAAACCTGTTATAGACGAAGATAAAACTTACGTTTACTGCGAAATAAAGAACACAACaccagaaaaagtaaaaaagaaacACAAATGCAAAGCTTGTAATAAAACATATAGAAAAAGTGATTTACAGAAACATAAATGCATAAAATCTAAAAAGAAAACGCCTAAGAATGCAAATCTTCCAgagaatttaacaaaaaaagttaaaagaaaaacagaacCGGAGAATTTAACTTGTGATTTATGTAATAAAATGTTTAGTGATAAATATGTACTAAGAAAGCATTTAAGAATACATTCCGGAGAAAAACCATACGTATGCAACAAATGTAACAGAGCTTTTCTCCTTCCCTCATACTTAAAAGACCATATTCTACGAACACATTCCGAGAACAAGGAATATGCGTGCTCAGAATGCCCTAAGACCTTCTCGGTTAAAAACACATTATTAAAACACATAAAACGACTCCACAGCGGCAAAACCCACACATGTGATCGCTGTGCACGAGCATTTAACAACAACAGCGACTTAAAATCTCATATGGTTGTCCACAGCAACGAACGACCACATATCTGTGCCAACTGTGGGAAGGCCTTTAAGAGGAAGAACCAGTTGAATGAACATATTAAGCAGCATAGTGATCAGAAGCCGAAGAAGACGGAGTTGTATGAATGCACGTATTGTAGTAAGAAGTATACTCTGCGAGCCAGCTTGTTCAATCATATTAAAACACATACGGGCATGTTGTATACTTGCGATAGatGCGCAGTCTCCTGCCGCGACCGCAGCACCCTGAAGATCCACATGCTGATCCACTCGGACGCGCGCCCACACTCGTGTCCCACCTGTGGGCGCGGCTTCAAGCGCAAGGGCCAGCTCAACGAGCACGCGAAGGTGCACTCGGGTGCGCGCCCGTACGCCTGCGATCAGTGTGACAAGACCTTTACGCAGAAGGGATCGCTCAACTTTCATAAGAGGGTCCACACCGGCCAGCGCCCCTACATCTGTGAGGTGTGCGGCAAGACCTTCGACAACAAGTACAACATGGTGAAGCACCTGCGGATCCACACCGGCGAGAGGCCTTACCACTGTCACAGATGCGAGCTTCGCTTCACGCACTCGAGCAGCCTGCACGACCACGCGCGCAAGTATCACGACGGAGAGAAACTCACCTGCGACGAGTGTTACAAGAGCTTCGTGCACAAGAGCACGCTCAAGAAACACATGAAGATACATGCCAGGGAAAAATAA
Protein Sequence
MVEAKFSVRISRLRCDNGGEYVNKQTKIFCETKGIQIENTIPYSPQQNGKAERLNRTIVEKARTLLVDSGFEKNMWGEAVYASIYAINRIPTVEKKIPAEIWFERTPDYARFRIFGSEAYAYINKETREGKMSEKSRLLYFIGYCNNGYRLWDGQNKKVVSSRDVIVNEQPCHKNTLYIDPKFLEQTSEIQENITTEQNLENQENATTEQNAEVNKPGVENLSSIDKRTRRRPVHLQDYECDDFHDCDFTAFNITENVPKTMKEALESNEKEEWIKAVQAELDSLEKHSTWTIVEKPKDKKIIHSRWVFRKKDQNIYKARLVAKGYESNEWSDTYAPVDWASDCNDRKSVSGFCMTLFGNIVLWASRKQKTVALSTAEAEYVALSSLVSEAIWFRGLVSDLNPNLSLLEFSLPESMCYVCYWKLQRCRRFVHMAHRSNNILQDIASIGLEVTQETLALLNIRTIQNLTIQTKITSTDLDTEGIIKHIAVKEEFNVENHDDIFTAEDNDEYIPSRDVELNDVAKTEDTAHDADIKPVIDEDKTYVYCEIKNTTPEKVKKKHKCKACNKTYRKSDLQKHKCIKSKKKTPKNANLPENLTKKVKRKTEPENLTCDLCNKMFSDKYVLRKHLRIHSGEKPYVCNKCNRAFLLPSYLKDHILRTHSENKEYACSECPKTFSVKNTLLKHIKRLHSGKTHTCDRCARAFNNNSDLKSHMVVHSNERPHICANCGKAFKRKNQLNEHIKQHSDQKPKKTELYECTYCSKKYTLRASLFNHIKTHTGMLYTCDRCAVSCRDRSTLKIHMLIHSDARPHSCPTCGRGFKRKGQLNEHAKVHSGARPYACDQCDKTFTQKGSLNFHKRVHTGQRPYICEVCGKTFDNKYNMVKHLRIHTGERPYHCHRCELRFTHSSSLHDHARKYHDGEKLTCDECYKSFVHKSTLKKHMKIHAREK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-