Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: -
Assembly: GCA_949316285.1
Location: OX438650.1:5989317-5994187[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.8e-05 0.0049 18.2 3.3 1 23 136 158 136 158 0.98

2 13 4.9e-07 4.1e-05 24.7 3.9 1 23 162 184 162 184 0.98

3 13 0.064 5.5 8.6 0.0 5 23 187 205 186 205 0.92

4 13 1e-06 8.8e-05 23.7 0.5 1 23 222 244 222 244 0.98

5 13 6.9e-05 0.0059 17.9 0.6 1 23 252 274 252 274 0.98

6 13 1.4e-06 0.00012 23.2 2.6 1 23 280 302 280 302 0.99

7 13 1.3e-05 0.0011 20.2 2.4 2 23 309 330 309 330 0.97

8 13 1.9e-07 1.6e-05 26.0 0.4 1 23 336 358 336 358 0.96

9 13 5.5e-05 0.0047 18.2 4.2 1 23 364 386 364 386 0.96

10 13 7.9e-05 0.0068 17.7 0.6 1 23 392 414 392 414 0.97

11 13 0.13 11 7.6 5.6 3 23 422 442 420 442 0.97

12 13 3.5e-07 3e-05 25.1 1.0 1 23 448 470 448 470 0.98

13 13 0.00031 0.027 15.8 0.9 1 20 476 495 476 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.8e-05	0.0049	18.2	3.3	1	23	136	158	136	158	0.98
2	13	4.9e-07	4.1e-05	24.7	3.9	1	23	162	184	162	184	0.98
3	13	0.064	5.5	8.6	0.0	5	23	187	205	186	205	0.92
4	13	1e-06	8.8e-05	23.7	0.5	1	23	222	244	222	244	0.98
5	13	6.9e-05	0.0059	17.9	0.6	1	23	252	274	252	274	0.98
6	13	1.4e-06	0.00012	23.2	2.6	1	23	280	302	280	302	0.99
7	13	1.3e-05	0.0011	20.2	2.4	2	23	309	330	309	330	0.97
8	13	1.9e-07	1.6e-05	26.0	0.4	1	23	336	358	336	358	0.96
9	13	5.5e-05	0.0047	18.2	4.2	1	23	364	386	364	386	0.96
10	13	7.9e-05	0.0068	17.7	0.6	1	23	392	414	392	414	0.97
11	13	0.13	11	7.6	5.6	3	23	422	442	420	442	0.97
12	13	3.5e-07	3e-05	25.1	1.0	1	23	448	470	448	470	0.98
13	13	0.00031	0.027	15.8	0.9	1	20	476	495	476	498	0.94

Sequence Information

Coding Sequence: ATGATCGACATCAATCTTGCTTGTAGGACGTGTATGAAGAGCAATGTTACTTTGGTGCATCTTTACGATCCAGTGAGTGTTGATGAGAACAGCAATATTCAATTGGTTGTACTGCTGTTGGAATGTGCCGCGGTACAAGTGATGAAAGACGATGGGCTGCCCCAAAACCTTTGCGAGGACTGCATCAAGGTGCTCCAACTAACTTATACATTTCGCAGTCAAGCTGCGAGGGCAGAGGAACAGTTCAGAATACTTCTACAAGAGAATGTGAAACAGGAAATCAAGGCAGAAGATGACCAGGACTTTGATACATATGATAACTTCTCTTTTGATAATGAAGACCTCAAGCTTGAACCTGATGAAAAtgataacaaacaaataaacaataaaagtGATATAAATCCCTACACCTGCCCAACATGCAGCAAAAGtttcacaaaagaaaaaaaataccaaaaacattTACAACTCCACAGCTCACAATTCAAATGTACATATTGCAAcaaaacttttagtaaagaaaGCTCACTTCAGAAACATTTGTTGAAACATGACCCGATATGTTGTGAAACATTTGCTGATGAGTCGGAGTTGTTCCAACATATTGCAACACATAACATAGCCACCATCAAAGATGAACAAGTCGATCAAATTCCCTCATCATATCCTTGCGATGAATGTGGGAAGAATTTTAACAGTAATAAATCTCTAATGCTCCACCAGAAAATACATAGACAAGAAAAACCGCTGAGCTATACTTGTGATATTTGTCAAAAAGAGTATGTTTCAAAAGCCATGGTGAAGCGACATTTGAAACTGCACGATAAAGATAAGCCGTTCAAATGCACACAATGTTCTCAGAGTTATTCTAGATCTGATCAGCTGAAGGTTCATATGAAATCACACTCGGAGCAGAAGTCCAATGTCTGTTCCTATTGTAATAAAGCATTCACCCAAATCTGCAGTTTGAAGGACCACATCAGAACACACACAGGAGAAACCCCGTACCTTTGCTCAGAGTGCGGCCGAGGCTTCGCTAACAGCTCCAACTTGAGGCAGCACATGCTGAGACATACTGGAGTGAAGCCGCATGCTTGCAAGCTGTGTCCTAAGTCCTTTTGCACTAAAGGTCAGATGACATCGCACATGGTCACCCACACAGGTGCGCACCCCCACGAGTGTGCGACGTGTGGCGCCGCCTTCACCAAACAAACGTCGCTGAAGAAGCACGCCATGATACACACGGGCCAGCGTCCGTACGGCTGCGAAACCTGCCTGATGCGATTCACCTGCAAAGACCACTTGAAGCGTCATACGCGCATCCACACCGGAGAGAAGCCTTACCGCTGTCCGCACTGCGAACGGGCATTCACGCAGAGCAACGACCTCGTCAAACATATACGCGGACATCTTGGGGACAATATTTAcgaATGCTCAGTCTGCAAAATGCGTTTCCGTCTCAAAAGCGAGCTGAATAAACACTACCCCGTTCATTTCACCGACGATGCTTCCATAAAGGATCTCAACATAGCTATAGACCAGGCAGTACAAAACGACGTACAAACAGAGAAACCTAACCAATCTAATATAGATACATACAAAATAGACAAACCTATAGACGAAacatataatacaatacaaagtcTCATAGACAAACaaatagatatttgttcaaagCCGGAGGAAAATACTGAAAGTGAAACGGCTATGAATACACAGACTTGTATATTGCCAGATATATTGCCGGATGGTGGTGCTCCGAAGAAACAAAACAAGTTTATGATAACTGTGAATCAGGATGGGATGATAGCTATTAATATTGCTCCTGAGGGTAGGTAA
Protein Sequence: MIDINLACRTCMKSNVTLVHLYDPVSVDENSNIQLVVLLLECAAVQVMKDDGLPQNLCEDCIKVLQLTYTFRSQAARAEEQFRILLQENVKQEIKAEDDQDFDTYDNFSFDNEDLKLEPDENDNKQINNKSDINPYTCPTCSKSFTKEKKYQKHLQLHSSQFKCTYCNKTFSKESSLQKHLLKHDPICCETFADESELFQHIATHNIATIKDEQVDQIPSSYPCDECGKNFNSNKSLMLHQKIHRQEKPLSYTCDICQKEYVSKAMVKRHLKLHDKDKPFKCTQCSQSYSRSDQLKVHMKSHSEQKSNVCSYCNKAFTQICSLKDHIRTHTGETPYLCSECGRGFANSSNLRQHMLRHTGVKPHACKLCPKSFCTKGQMTSHMVTHTGAHPHECATCGAAFTKQTSLKKHAMIHTGQRPYGCETCLMRFTCKDHLKRHTRIHTGEKPYRCPHCERAFTQSNDLVKHIRGHLGDNIYECSVCKMRFRLKSELNKHYPVHFTDDASIKDLNIAIDQAVQNDVQTEKPNQSNIDTYKIDKPIDETYNTIQSLIDKQIDICSKPEENTESETAMNTQTCILPDILPDGGAPKKQNKFMITVNQDGMIAINIAPEGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00699439;
90% Identity: iTF_00703243;
80% Identity: -