Esub009796.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438637.1:3155183-3160819[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.7 60 5.3 1.0 1 21 58 78 58 79 0.96 2 32 1.1 94 4.7 0.7 2 23 107 128 107 128 0.94 3 32 0.064 5.4 8.6 0.3 2 23 151 172 150 172 0.97 4 32 0.06 5.1 8.7 0.4 1 23 176 198 176 198 0.94 5 32 0.0095 0.81 11.2 0.1 1 23 203 226 203 226 0.90 6 32 0.062 5.3 8.6 4.1 1 23 232 255 232 255 0.96 7 32 0.002 0.17 13.3 2.1 1 23 262 285 262 285 0.98 8 32 0.12 10 7.7 0.2 1 23 368 391 368 391 0.96 9 32 0.19 16 7.1 0.8 2 23 418 439 417 439 0.95 10 32 0.3 26 6.4 2.7 1 23 462 484 462 484 0.98 11 32 0.0056 0.48 11.9 0.3 1 21 488 508 488 509 0.88 12 32 0.047 4 9.0 0.4 1 23 520 543 520 543 0.94 13 32 0.34 29 6.3 1.3 1 22 549 570 549 572 0.85 14 32 0.036 3.1 9.4 2.9 1 23 579 602 579 602 0.88 15 32 0.011 0.94 11.0 4.2 1 23 611 633 611 633 0.98 16 32 0.0068 0.58 11.6 0.7 1 23 687 709 687 709 0.96 17 32 0.022 1.9 10.0 0.1 2 23 734 756 733 756 0.93 18 32 0.037 3.2 9.3 0.7 2 23 779 800 778 800 0.97 19 32 0.00093 0.079 14.4 0.1 1 23 804 826 804 826 0.95 20 32 0.00025 0.021 16.2 0.5 1 23 831 854 831 854 0.96 21 32 0.02 1.7 10.2 1.9 1 23 860 883 860 883 0.95 22 32 0.35 30 6.2 0.2 1 22 889 909 889 911 0.82 23 32 0.69 59 5.3 0.0 1 23 961 984 961 984 0.83 24 32 0.27 23 6.6 0.2 2 23 1007 1029 1006 1029 0.93 25 32 0.00056 0.047 15.1 2.6 1 23 1051 1073 1051 1073 0.99 26 32 1.2e-06 9.9e-05 23.5 0.2 2 23 1078 1099 1077 1099 0.97 27 32 9.2e-05 0.0079 17.5 1.1 1 23 1107 1130 1107 1130 0.96 28 32 0.0011 0.093 14.1 8.2 1 23 1136 1159 1136 1159 0.96 29 32 0.069 5.9 8.5 0.6 1 23 1165 1188 1165 1188 0.95 30 32 0.092 7.8 8.1 4.7 1 20 1194 1213 1194 1216 0.94 31 32 9e-07 7.7e-05 23.8 1.0 1 23 1222 1244 1222 1244 0.98 32 32 0.0042 0.36 12.3 7.2 1 23 1250 1272 1250 1273 0.96
Sequence Information
- Coding Sequence
- ATGACCTACGATACTTTAGTAAAAGTAGaggataataattatttagaagtGAAACCGAAATCCAAATACCAACGCAGCGAGAGAGCAGAGACACGCATCGCAATAAAGAAGAACGCCACTTCTATCCTACAATGCTGGACCTTGATCCCCTTTAGATGGAAAAAGAATAAATTTAAATGCGCTTATTGCGAGGACAACTTCACTGAATGCAACACACTCAGGGGACATATCAGACTCTGCTCCGCTCAACACAACATCAAAGACATCTACAGCAAATTCAAGGAGATGCCGATTATAAACGTCGATAGCATCGAAGCCGTATGTTGCTTCTGCTCCATCCCCTTCTCAGACGTCAGACAAATGCGCGAACATGTCATCCAACATGGCTTCGAGTTCGATACCAACTACCCGGACGGCGTCCTCCCATTCTACCTAGATAAAGAGTCCTGGAAATGCGTGATATGCGCAGAGAAATTTAACAATTTCCTTAAACTTTACGAACATATGAACGTTCACTATCAGCACCATATTTGTGCTACTTGCGGCAAGGGGTACATGACTGCTCCTAGGTTGCGGAAGCACTCCGAAGTGCATATATCTGGCTCGTTTCCATGCTCGGATTGTGGCAGGGTTTTTACCATGAGAGCAGCGAGAGACTCTCACAAGGCGACTGCGCACGCTAAAAGCTTTAGATACGAATGCCCCCACTGCTACATCAGATTTGAAAGCTACtatcacagaatgacacatttaaAAGAAGAACACAGCGAGAAGGAAGTCACTTACATCTGTTCTCATTGCAAACTCTCCTTTAAAACGAGTGGGCGACGCGCCAGTCACATTCGTACCGCGCATTTTCCTACGAAATACAACTTTAACTGCACTTACTgttcAGTTAATGAAGCTCAATCAATATTAGGTGCGGCTAAAcggaaattaaaagaaaacgtaAGCGAACGTCAGATGCGTAGGCGTCGGCGAGCTAACAACGAGTTGCCGGAAGAGTCGGAGAAACGAATCTCGAAGACTATGATGAGACGAAACGCCATGACCATTCTAGAGACCTCCACAGCCTGGGCCTTTCGATGGTTCCACGGAGCTTTCTATTGCGCGTACTGTGACAATAAATACGTCGACATAATGCTATTGAGAGAACACGTCGCTACCAATCACCTTTGCGAACCACCGTCCAAAACAGTTTTCTCAAAACTAAAGGAGAATAACATCGTTAAAATAGATATTAACCAACTGCATTGCAGACTTTGCGATATTAGTCTAGATGGCATAACAAATCTTAAATCACACATTAAATCACACGGAAAATACATACCAGACAAATATGGCGATGGAGTGTTGCCATTCAAACTGGATGATAGCAACGGCTTTCATTGCCAAATGTGCACATCCCAGTTCGCAACATTTGGCAAAATAAACGAACATATGAACACGCATTATCAAAACTATGTCTGCGACACTTGCGGGAAAGGCTTTGTTACAAAATCCAGATTTAGGCCTCATGTTCAAACGTGCTTTAACAATTTACTGGAAAAGGGGAATTTCGCTTGCGGATTATGCGATGAATTCTTTAGCTCTAGAGCAGAGAGGCTAAGCCATCGTTCGAAAATCCATCGCAAGGGAGTCCGGTATAATTGCCCTCGGTGCTCGGAAGTATTCACGACATACCACGCGAGAGGCAATCATTTGGTAAACTTTCACGCAGAAAAAACCAGGGAATATGTCTGCAGTTTTTGTAATCAGTCGTTTACTACGAGTTCTAAGCGAGCAGCACACTGCAGGCTTGTGCACAGATCTCCAGTGCGAAGCGAAACCCACCAGTGCTACTACTGTTCCGCTCATTTCCCTAGCAAATGGAGACTTGGCCGGCATATGAGATCGCATGAACgaatGCAACAGACTGATACAACAATTGCCAGCCAGTTGATAGGCGCTCGCCAGATCGTGCTGACGAAAAAAAGGACATTGATGGAGGACAAGGCAAACGCGGGAATGCTTTTAAAGTACTCGAATGCGGTCGTCTTTAGATGGCAAAGAGGGAAGTTCATGTGTGCGCATTGTCCTGAAAATTTTGCCAATTTTACAGATTTACGCATCCACTCTGCTAAGCACAATAAGTTAGATATAATCGAGACTTACAAGACTCGTCTCATCTATCCCTTGAACTTGGATATATCAAGTCTCGTTTGCAGTATTTGCAATGCATCGTTAAAGGATATTGATGATTTAAAAAGTCATCTATCAAATGACCACAGTATATCTATAGATGGAAATTACGCTGATGGTGTTATACCTTATCGTTTGGTCGGAGACGGTTTGCGATGTGCGATCTGCGAATCTAGTTTCGACAAATTCATGACTCTATTTATTCACATGAACAAACATTATCCTAGCTACGTCTGTGATTTCTGCGGAAAAGCTTTTTCCGCCGCGAATAAGCTAAGATCACACAATGCTATACACAATCCTGGAACGTTTAAATGCAATGAATGCGACGCTGTTTTCACAAATAAGGCGGCTAAGAACAGACATGTGAGCATGAAACACCGTCCCAAGGAGCGATATAAATGCCCGATTTGCGATAAACATTTAAATTCGTACTATATGCGGTTGCAGCACCTCAAACTTGTCCACGGACAGACTTCAGAGTACCGCTGTGCCTATTGCCCCACTGTATTTGACAGTGGGGCTGCCAGGTCTCACACAGACCAAAAACATAATAAGTTGGACTTGTTCGAAAAGAACGgaGACCCTGCCCGGAGAAATGGTTGGATACCGAAGCGAAAATACTACGACCACAGAGACAATGCAGCACTTATTCTAGAATATTCAAACGTTTGTCCATTCAGATGGAATCGAGGCATGTTTGTCTGCGGAATCTGCCCACAAAAATTCGCTAAGTTCGAACCTGTCAGAGAACATGTCGCATTAGAGCATCCCAACACAATCGAGGCACTTAAGCCTATAAAAAAACACTTGCTAAAATGCGATATAACAGATCTTAAATGTAAGATATGTCACGCAAGCATAAAAGACATCAACGCTCTTGTTGATCACTTAAAAGATGAGCACGGTAAACCGCTTCTCAATGACTGTGGTAAAGGTATCATTCCCTATGGGTTGAACACTGCGTTGTACAAATGCATGCACTGCCCTGAAACCTTTAACTTCTTCAACTCTTTGAACAGTCACATCAATATCCACTACCCGAATTCTGTATGTCCGATCTGCGGAAAGGCTTTCTCGAATACCGGTAATATGAACTACCACATGCAAACACACGGCATTGGAACCAAAGGGGTCTACAAGTGCTCCAAATGTGACGAGGTTTTCACTACCCCATACGATAAACAAAAACACGTTACGTCGTTGCACTCTAAACTGAAAAGGTACAGATGCCCACATTGCCACGAGAGCTTCAAGAGCTACTCACATAGGTTGAAGCATATGAATGAATTTCACGATACTAATATTGAGTTCCCCTGTAGCCTTTGCCCTGCGGTGTTTACGATGCACAATATGAGGACAAAGCACATCCAGCTAGTTCATATCAAAGAGAAACGTTTCAGTTGCACTGAATGCTCGCACCAGTTTGTGTCCACCTCGATGCTTAGAAGACACAAGATCTGTCACATTGGGGAGAGGAAATACCACTGCGACGTTTGCAATAAATCTTACGCGCGTCCCGACACGCTGAAGGAACACATGCGTATACACACTAATGATCGTAGGTTTGTCTGTATGCACTGCAATAGTGCGTTTATTCAGAAATGTAGCCTTAACAGTCATATGAAGACGCATCACCCTACCCAACCATGA
- Protein Sequence
- MTYDTLVKVEDNNYLEVKPKSKYQRSERAETRIAIKKNATSILQCWTLIPFRWKKNKFKCAYCEDNFTECNTLRGHIRLCSAQHNIKDIYSKFKEMPIINVDSIEAVCCFCSIPFSDVRQMREHVIQHGFEFDTNYPDGVLPFYLDKESWKCVICAEKFNNFLKLYEHMNVHYQHHICATCGKGYMTAPRLRKHSEVHISGSFPCSDCGRVFTMRAARDSHKATAHAKSFRYECPHCYIRFESYYHRMTHLKEEHSEKEVTYICSHCKLSFKTSGRRASHIRTAHFPTKYNFNCTYCSVNEAQSILGAAKRKLKENVSERQMRRRRRANNELPEESEKRISKTMMRRNAMTILETSTAWAFRWFHGAFYCAYCDNKYVDIMLLREHVATNHLCEPPSKTVFSKLKENNIVKIDINQLHCRLCDISLDGITNLKSHIKSHGKYIPDKYGDGVLPFKLDDSNGFHCQMCTSQFATFGKINEHMNTHYQNYVCDTCGKGFVTKSRFRPHVQTCFNNLLEKGNFACGLCDEFFSSRAERLSHRSKIHRKGVRYNCPRCSEVFTTYHARGNHLVNFHAEKTREYVCSFCNQSFTTSSKRAAHCRLVHRSPVRSETHQCYYCSAHFPSKWRLGRHMRSHERMQQTDTTIASQLIGARQIVLTKKRTLMEDKANAGMLLKYSNAVVFRWQRGKFMCAHCPENFANFTDLRIHSAKHNKLDIIETYKTRLIYPLNLDISSLVCSICNASLKDIDDLKSHLSNDHSISIDGNYADGVIPYRLVGDGLRCAICESSFDKFMTLFIHMNKHYPSYVCDFCGKAFSAANKLRSHNAIHNPGTFKCNECDAVFTNKAAKNRHVSMKHRPKERYKCPICDKHLNSYYMRLQHLKLVHGQTSEYRCAYCPTVFDSGAARSHTDQKHNKLDLFEKNGDPARRNGWIPKRKYYDHRDNAALILEYSNVCPFRWNRGMFVCGICPQKFAKFEPVREHVALEHPNTIEALKPIKKHLLKCDITDLKCKICHASIKDINALVDHLKDEHGKPLLNDCGKGIIPYGLNTALYKCMHCPETFNFFNSLNSHINIHYPNSVCPICGKAFSNTGNMNYHMQTHGIGTKGVYKCSKCDEVFTTPYDKQKHVTSLHSKLKRYRCPHCHESFKSYSHRLKHMNEFHDTNIEFPCSLCPAVFTMHNMRTKHIQLVHIKEKRFSCTECSHQFVSTSMLRRHKICHIGERKYHCDVCNKSYARPDTLKEHMRIHTNDRRFVCMHCNSAFIQKCSLNSHMKTHHPTQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -