Esub008739.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- tc1a
- Assembly
- GCA_949316285.1
- Location
- OX438635.1:12215657-12222514[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.027 2.3 9.8 3.9 1 23 251 273 251 273 0.96 2 16 0.0019 0.16 13.4 2.2 1 23 280 303 280 303 0.95 3 16 0.00024 0.02 16.2 3.0 1 23 310 332 310 332 0.98 4 16 0.002 0.17 13.3 4.2 1 23 339 361 339 361 0.98 5 16 2.2e-06 0.00019 22.6 4.1 2 23 367 388 366 388 0.97 6 16 2.8e-05 0.0024 19.1 0.5 3 23 394 416 393 416 0.92 7 16 3 2.6e+02 3.3 5.3 1 23 424 446 424 446 0.96 8 16 1.8e-05 0.0015 19.8 2.0 1 23 450 472 450 472 0.98 9 16 4e-06 0.00034 21.8 6.3 1 23 478 500 478 500 0.97 10 16 1.9e-05 0.0017 19.6 0.4 1 23 506 528 506 528 0.98 11 16 0.0056 0.48 11.9 2.0 1 23 535 557 535 557 0.95 12 16 1.5e-06 0.00013 23.1 3.5 1 23 563 585 563 585 0.98 13 16 2.6e-06 0.00022 22.4 0.2 1 23 591 613 591 613 0.97 14 16 8.2e-07 7e-05 24.0 2.3 1 23 619 641 619 641 0.98 15 16 3.9e-06 0.00034 21.8 0.4 1 23 647 670 647 670 0.97 16 16 1.3e-06 0.00011 23.4 3.9 1 23 675 697 675 697 0.98
Sequence Information
- Coding Sequence
- ATGAACAAAAATCCCCCCCCTCACGTCACTCGGTGCGTCGAGGAGTATCTTCAAGAGGTTGGGATCCGGAAGTTACAGTGGCCAGCTCGTAGCCCGGACTTGAACCCGATAGAACACATTTGGGAGATGCTAAGAAGAAAGATCAAGTCGGGTTCCAATCCACCACAAACACAAAACGAGCTGCGCAACgCGACGAAGGAAACACTAGAACTTATGAATGTTGCACCTTATCAAAACTTGTCAGTAAGCACCGCAGAGTCTATGGTCACCATGGATGTCATGGAAGCAGATGAAAGTCTTGAGATTATCATAAAAGAAGAACCAGTCGAGTTCAATGAAGACATAGACGAAGAAACTGCCCCTGAAGACGCCTTTGAAGATCATGATGAAAAAGAAGAACCACTCGAGTTCAAAGAAGAAATAGACGAAGAAACTGCCCCTGAAAACGCTTTTCAAGATCATGATGAAAAGCCGCTAgCGACGAAGGAAACATTAGAACTTATGAATGTTGCACCTTATCAAAACTTGTCATTAAGCACCGCAGAGTCTATGGTCACCATGGATGTCATGGAAGCAGATGAAAGCATTGAGGTTATCATAAAAGAAGAACCAATCGAGTTCAAAGAAGAAATAGAAGAAGAAACTGCCCCTGAAGACGCTTTTGAAGATCATGATGAAAAACCGCTAGTAAATTCCCTGAAGATGGAAGACCCCTCATCAGATAACGAGCACAATAATGCCACAGAACCATATTTTTGCAATACATGCAATATTTCCTTCAATCTTAAATTTCATTATGAACAACATGCGAAATTACATGACGAAGAAGAAAAGACGTATGCTTGCGATCACTGCCCTAAGAAATTTAAACTTAAACAGAGTTTACCTAAACACATGATCAACTTCCACAGTGAAAGGAGTAGACTGTACCCCTGCACTAAATGTACCGAGAAATTTTATCACAAAATTGCCTTGAGAAAGCATTTACTTTCTCATAAAGATACCACTTCAGAGTTCACGTGTGAAATCTGCGATAGAAACTGCATGAACTTACATAATCTTCTGAAACATAAAGCGACACATACAGTAGAATCTGTAACTTGTAAGACATGcgaaaaaatgtttaaaaacaaacaaacgctTAAAAAACACATGAAAACGCATAATCCACAAAACGCTTGCGACCATCCAGGATGCGGGAAGATATTCGCGCAGAGAGATCAACTGACACGGCATTCTAGAGTCCACGGGGAGCAGCCGATCACAAAATACTCATGCTGTCAATGCACCGAATACTTCGACAATGAAAACGATTACGAAACACACAAGGAACACCACGAGAAAGGATTCCCCTGTCCCCAATGCGACAAAACTTTTGTCGACCGCGGAAGACTACGGCACCACACCTACACACATACGGAAGGCAAAACGTTCAACTGCGAACATTGTCATAAAACTTTCTCCCGACAGATCTACCTTAACCGGCATATGAAAGGGCATGCTGAAGTCAAACCGTACTCATGTACTGAGTGTGACCGCGCCTTCGGTTTGAGATACAGTCTCATCAAGCATATGGAATCGCATTGCGAGAAGATTTACACGCATCCATGCGAGCATTGTCCGAAAGTCTTTACTGACATGAACAGGCTCAAGTTTCATATGGCAGTCCATTCTGGGGTGAAACCACACGTGTGCACAGTTTGTGAGAAAGGGTTTACAAGGAGCCATCAGTTGAAGGAGCATATGCGAGTGCATAGTGGAGAGAAGCCTTTCGCTTGTGAGGAGTGTGGGAAGAGCTTTACTCAAGCCGGCTCGCTGGTGTTGCATAAAAAGAGCCACACTGGCTTGCGGCCTTTCGTTTGCCAAGAGTGCTCGAAGACGTTCTACAACAAGTACACGCTGCAGATACACCTGCGCACTCACAGCGGGGAGCGGCCCTACGCCTGCAGCATCTGCGACCAGCGGTTCACTTACAACACTGGATTGAATGAGCATATGCGAAGtGTTCATAATCAAGGGAAGTTCACTTGTGAACACTGTGACAAGACTTTCAATAGGAAGGCCCGTTTACAGCGGCATCTGGAGACTCATCTCACAGAGTAG
- Protein Sequence
- MNKNPPPHVTRCVEEYLQEVGIRKLQWPARSPDLNPIEHIWEMLRRKIKSGSNPPQTQNELRNATKETLELMNVAPYQNLSVSTAESMVTMDVMEADESLEIIIKEEPVEFNEDIDEETAPEDAFEDHDEKEEPLEFKEEIDEETAPENAFQDHDEKPLATKETLELMNVAPYQNLSLSTAESMVTMDVMEADESIEVIIKEEPIEFKEEIEEETAPEDAFEDHDEKPLVNSLKMEDPSSDNEHNNATEPYFCNTCNISFNLKFHYEQHAKLHDEEEKTYACDHCPKKFKLKQSLPKHMINFHSERSRLYPCTKCTEKFYHKIALRKHLLSHKDTTSEFTCEICDRNCMNLHNLLKHKATHTVESVTCKTCEKMFKNKQTLKKHMKTHNPQNACDHPGCGKIFAQRDQLTRHSRVHGEQPITKYSCCQCTEYFDNENDYETHKEHHEKGFPCPQCDKTFVDRGRLRHHTYTHTEGKTFNCEHCHKTFSRQIYLNRHMKGHAEVKPYSCTECDRAFGLRYSLIKHMESHCEKIYTHPCEHCPKVFTDMNRLKFHMAVHSGVKPHVCTVCEKGFTRSHQLKEHMRVHSGEKPFACEECGKSFTQAGSLVLHKKSHTGLRPFVCQECSKTFYNKYTLQIHLRTHSGERPYACSICDQRFTYNTGLNEHMRSVHNQGKFTCEHCDKTFNRKARLQRHLETHLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -