Esub008738.2
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438635.1:12202496-12209436[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.13 11 7.6 5.6 1 23 69 91 69 91 0.97 2 33 1.7e-05 0.0014 19.8 1.7 1 23 98 121 98 121 0.97 3 33 0.0013 0.11 13.9 5.5 1 23 128 150 128 150 0.97 4 33 3.3e-05 0.0028 18.9 0.6 1 23 160 182 160 182 0.98 5 33 0.00018 0.015 16.6 2.7 2 23 188 209 187 209 0.97 6 33 0.00015 0.013 16.8 0.3 2 23 214 237 213 237 0.92 7 33 0.00025 0.022 16.1 2.1 1 23 243 265 243 265 0.98 8 33 1.6e-06 0.00014 23.0 2.4 1 23 271 293 271 293 0.98 9 33 8.7e-05 0.0075 17.6 2.7 1 23 298 320 298 320 0.98 10 33 0.00058 0.05 15.0 0.4 3 23 328 348 326 348 0.95 11 33 5.7e-06 0.00048 21.3 1.6 1 23 353 375 353 375 0.98 12 33 2.6e-05 0.0022 19.2 0.6 1 23 381 405 381 405 0.96 13 33 6.2 5.3e+02 2.3 0.2 1 10 411 420 411 427 0.85 14 33 0.0085 0.73 11.3 2.9 2 23 553 574 553 574 0.97 15 33 0.0015 0.13 13.7 5.9 1 23 579 601 579 601 0.97 16 33 5e-06 0.00042 21.5 0.4 1 23 620 642 620 642 0.98 17 33 0.00027 0.023 16.0 2.2 1 23 654 676 654 676 0.98 18 33 0.00071 0.061 14.7 2.1 1 23 681 703 681 703 0.99 19 33 0.00021 0.018 16.4 0.6 2 23 708 731 707 731 0.92 20 33 4.1e-06 0.00035 21.8 0.7 1 23 737 759 737 759 0.97 21 33 0.00086 0.073 14.5 3.1 1 23 765 787 765 787 0.92 22 33 2.3e-06 0.00019 22.6 2.4 1 23 793 815 793 815 0.98 23 33 0.00022 0.018 16.4 1.5 1 23 821 845 821 845 0.93 24 33 4.1e-06 0.00035 21.8 1.2 1 23 851 873 851 873 0.98 25 33 0.00017 0.014 16.7 7.3 1 23 879 901 879 901 0.98 26 33 7.6e-05 0.0064 17.8 1.4 1 23 907 929 907 929 0.97 27 33 0.00021 0.018 16.4 0.4 1 23 935 957 935 957 0.98 28 33 0.00048 0.041 15.3 0.5 1 23 961 983 961 983 0.98 29 33 0.00035 0.03 15.7 3.5 3 23 991 1013 989 1013 0.91 30 33 5e-05 0.0043 18.3 1.1 1 23 1019 1041 1019 1041 0.97 31 33 1.4e-07 1.2e-05 26.4 0.6 1 23 1047 1069 1047 1069 0.98 32 33 0.0016 0.14 13.6 0.1 1 23 1075 1097 1075 1097 0.96 33 33 2.2e-06 0.00019 22.6 6.8 1 23 1104 1126 1104 1126 0.98
Sequence Information
- Coding Sequence
- ATGGCCACTATATTTATTGTCGAATCAACTGATAGCCCTGAAAAAGCTGTAAAGGATGAACCCTTTGCtttaaaagaagaagaaatacATGAAGAATCCGTCTTTGAAGATACctttgatgataatgatgatgaacctCTTAAGAAACTTCTTAAACTAGAAGATACTGCATCAAGAAGAGAGGAAAACAATGCCAGAGAATCATACTTTTGCTATAAATGCAATATATCTTTCAATCTCAAATTCCATTATGAAAAACACTCAAAGATACACACAGAAGAAGAAAAGATATATGCTTGCAATGACTGTCCCAAAAAATTTAAGCTTAAACGAAGTTTAGTTAAACACATGCTGAAATTCCACAGAGAAAAGACAAAACTCCACCCTTGCAGTAAATGTAATGAGAAATTTCATCGCAAAAACGCTTTGAAAAAGCATTTACTCTCTCATAAAGATACAATTAATTGTATAGAAGAATTCACATGTGAAATTTGCAATAGAGTTGTTAACAACCTATACAATCTCCAAAAACACAAGGCGACGCATACAGAAGATTCCTTGACTTGTCAAACATGTGGCAAAAACTACCTCAACAAAAATACACTGAAGAAACACATGCGAACGCATAACCTACAGCATGCTTGCGAACAACCAGGTTGTGGTAAGATCTTCGCGCAGAAAAATCAGCTAACTATTCACTCTAGGGTTCACAGTGGAGAGAGACCATTTTCTTGCAACAAATGTAATAGATCCTACACGCTCTTGGACTCTTTGAAATACCACCAAAGAGCTCACGAAGGAAACAGGCCGTACAAGTGCAACCTATGCGAGAAAGCCTTCTACAGAAAGTTCAATTTAACAAACCATATGAAAGCACATGAAAGAGAGTCGTACAACTGCTTGCATTGCAGTAAAACCTTTACCCTACCTGTGCATTTAGAAACTCATATGCTTATCCATACTACATTAAAACCTCATTTGTGCAGACTCTGTGATTTAACCTTCGCGGCTCCAAGCAGTTTGAAAGCCCACATGGTAACCCATACTGACTACTTGTTTACTTGCGACCGATGCGCGAAAAGCTTTCGCGACAAGAGCAGCCTCCAAAGCCATATAAAACTGCACGACGGAATAAAACCCCACGTCTGTCCGGAACCGAACTGCGGGAAAGCCTTCGTCCGGAAATTTCAATTAAAAGAACATTCTAGAGTACATTCCGGAGAAAGACCGTACATTTGCAATGAGTGTGGTCTCCCATATCCAGAGAGGGTATGCTATGTATGTCACTGGCAGCTGCTAAAGTGCCGCAAGTTTGGAGACATGGCTCAAAGGTCCAGTGGTGTACTCAAGGATTTATACCAAAGAGGTTTTGTTGCAACAGAAGAAACTCTCATTATGATGAACATAGAAATAACTTCAAACTTATCAATCAGCAATGATAAATCCATGTTCATTTTATCAATTAATGAAGCCGACAGTGAATTGACTGTTAAAGAGGAACCACTGTCTCTAAAACAGGAAGATTCTCCAGATGATATATTTGAAATGGCTTTTGCAGAGGATATTGAGTCAGATGAACCATTAAAAGTATCTAAGAGCTTAAAACTAGAAAATGCTTCAACAAGTAAGGAAATGCTAAGCAATTTCCAAGATAACTATTGTCATAAGTGCAATATACCTTTTTTAAGCAAATATTACTACAACAAACACATGAAAATTCATATTGAAGATAAGTACTGCTGTGACAAGTGCCCTAAGAAGTTTAAATTCAAGAAAAGATTAGTAAAACACATGTTGAATCATAGCGATGAGAAAGAAATCAGCCCGAAGCAAAAACCAACAAAAGATACATCTGGATACACATGTGAAGTGTGCAATAAAACTGTCAGTAATCTGTACAACCTTCAACTACACATGTCTGTACACACTAAGAAGAAACCTGAGCCTACCACGACTGAATTTACATGTGACATCTGCAATAGAAGCTTGAATAACCTACATAACTTACTGAAGCACAAAGCAACTCACACAGAAGAAAAATACTCATGCGATACTTGTTCTAGAAGCTACTTAAATAGGGATTCTTGGAGGAAACATATGAGAACTCATTCAGCACAGCATGCTTGCGACCACCCTGGTTGTGAAAAAGTCTTTCCACAGAGAAATCAATTAATAGTCCACTTAAGGGTTCATACTGGTGAGAGACCTTTCGCATGTGAAGAGTGTGGGAAATCATACACAAAAATGGAGTCCCTGAAAGTCCATCAAAAAACGCACTCGAATGAAAAACCACATAAGTGTATTTCTTGCAATAAGTCGTTTAATTCTAAAGTTAATCTACTGAACCATATAAAATCACACACTGATAGCAACAGTTTTGAGTGCCCACATTGTAACAAGTCATTTTCGCTAGCTATACATTTAGAGAAGCATATGGTGACCCATACATCTGTAAGAAGGCATATATGCGAAGAGCCGGGATGCGGCAAAGAATTTGCGAGACGCTTCCATTTAAAAGAACATAGTAGAATACATACAGGAGAAAGACCATTTTCATGCTCAGAGTGTGGTAAGACGTTTATGAAGTCAGAGTCTTTAAGATCTCATCTCAAAATTCACAGCGAAGATAAACCCCATAAGTGCGCGTCGTGCTCCAAAGCGTTTCATCGAAAGAGAAATCTACAAAAGCACATGAAAACACATGACGAAAAGGAGTCTTTTGATTGCGAGCATTGTACTAAAACTTATACTCTACCCATCCAATTAGAAACCCATATGCTAACCCATACAAACCTAAAACCCTACGCTTGCACCCACTGCGTCCTAACCTTTGCTGCTCTGAGCAGTTTGCAGGCACACATAAAAACCCACGAGTACAAATACACCTGTGACAGATGCGCAAAAAGTTTCGGTGAAAAAGGAACTCTTCAGAGTCATATAAAACTCCATGATGGAATAAAACCTCATTTGTGCGAGCACCCTGGTTGCGGCAAGGCTTTTGCTAGACGCTACCATTTGAAGGAACACTCCCGCGTTCACACAAAAGAAAAACCTTTTATATGCAACGAATGTGGGAAGACGTACACACAAAGCAGTGCTCTATTCTTCCACCAGAGACTGCATAGCGGAGAAAGACCATTTATCTGCGAAATCTGTGGTCGAACATTCACGGATAAGTATGGTCTCCAAAAACATACAAGGGTGCACACGGGTGAGAAACCTTATGCTTGTGACAGTTGTGATCTGAGATTCGCGTATGCTAGTGCCTTGCGCGATCATAGGGCCATACATGTGAACGGGGAGAAACCATACGCGTGTGATAGGTGTTTTAAGACCTTCTGTCGTAAGAGTAACTTGAAGAAGCATATGAAAACGCATTTAAGggataaacagttttttaaaagcCCGTGA
- Protein Sequence
- MATIFIVESTDSPEKAVKDEPFALKEEEIHEESVFEDTFDDNDDEPLKKLLKLEDTASRREENNARESYFCYKCNISFNLKFHYEKHSKIHTEEEKIYACNDCPKKFKLKRSLVKHMLKFHREKTKLHPCSKCNEKFHRKNALKKHLLSHKDTINCIEEFTCEICNRVVNNLYNLQKHKATHTEDSLTCQTCGKNYLNKNTLKKHMRTHNLQHACEQPGCGKIFAQKNQLTIHSRVHSGERPFSCNKCNRSYTLLDSLKYHQRAHEGNRPYKCNLCEKAFYRKFNLTNHMKAHERESYNCLHCSKTFTLPVHLETHMLIHTTLKPHLCRLCDLTFAAPSSLKAHMVTHTDYLFTCDRCAKSFRDKSSLQSHIKLHDGIKPHVCPEPNCGKAFVRKFQLKEHSRVHSGERPYICNECGLPYPERVCYVCHWQLLKCRKFGDMAQRSSGVLKDLYQRGFVATEETLIMMNIEITSNLSISNDKSMFILSINEADSELTVKEEPLSLKQEDSPDDIFEMAFAEDIESDEPLKVSKSLKLENASTSKEMLSNFQDNYCHKCNIPFLSKYYYNKHMKIHIEDKYCCDKCPKKFKFKKRLVKHMLNHSDEKEISPKQKPTKDTSGYTCEVCNKTVSNLYNLQLHMSVHTKKKPEPTTTEFTCDICNRSLNNLHNLLKHKATHTEEKYSCDTCSRSYLNRDSWRKHMRTHSAQHACDHPGCEKVFPQRNQLIVHLRVHTGERPFACEECGKSYTKMESLKVHQKTHSNEKPHKCISCNKSFNSKVNLLNHIKSHTDSNSFECPHCNKSFSLAIHLEKHMVTHTSVRRHICEEPGCGKEFARRFHLKEHSRIHTGERPFSCSECGKTFMKSESLRSHLKIHSEDKPHKCASCSKAFHRKRNLQKHMKTHDEKESFDCEHCTKTYTLPIQLETHMLTHTNLKPYACTHCVLTFAALSSLQAHIKTHEYKYTCDRCAKSFGEKGTLQSHIKLHDGIKPHLCEHPGCGKAFARRYHLKEHSRVHTKEKPFICNECGKTYTQSSALFFHQRLHSGERPFICEICGRTFTDKYGLQKHTRVHTGEKPYACDSCDLRFAYASALRDHRAIHVNGEKPYACDRCFKTFCRKSNLKKHMKTHLRDKQFFKSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00698495;
- 90% Identity
- -
- 80% Identity
- -