Esub030695.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- -
- Assembly
- GCA_949316285.1
- Location
- OX438651.1:5685689-5692585[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 2.2e+03 -0.6 0.0 3 18 107 122 107 123 0.92 2 2 1.5e-07 0.00017 22.2 0.0 3 41 175 214 173 216 0.90
Sequence Information
- Coding Sequence
- atgcTCACGCCGCTACACAAGCAACAAAGAATCGAAGCGTCAAAGCGCTTTTTGGAGCTGTGTAGCGAAGAATCTACCCCTATTTTGGAGCGGATTGTTACCGGTGATGAAACTTGGGTTCATCACTTTGAACCTGAGTCCAAACAGGAGTCGATGCAGTGGCATAAAAAGGGCACACCACCCCCTAAGAAGTTTAAGGTGTCGGAGTCGGCCGGAAAGATTATGGCTACGATTTTTTGGGATTGTGAAGGAATCCTGTTGATCGACTACAAAGAAAAAGGTGTCAACATTACCGGAGAATATTACGCAAGAATACTAGAGCAATTAAAGGAAGCcatcaaaaacaaaaggcgGGGAAAACTGTCAAGCGGTGTGTTGCTTTTGCAAGACAACGCACCAGTTCACAAGAGTAAAGTTGCGATGGCTGCTCTAGACCGgaaTAAAGGAAAACCGAAATCCAGACAGAGAGAACGAAAAACACGACGGCGTATTGGGGCCCGTGAATATAAAAACTATAGCCAAGAAATGCTTGAACTTGCAGTTGAGTATGTGGGAAAAAATAAGTTATCGGCAAGAGCAGCTGCAAAACAGTTTTCCATACCTAAACAGACCATATTGAACAAAGTCCACAAAAAACATAACAAGTCTGTTGGATGTCCAACGCGTCTATCAGCGGAAGAAGAAGCCAAAATAGTTAAAGTCCTGATTGCCGCTGCTAATTTTGGATGCCCGCTTACTAAATTAGACCTACGTCTCGTGGTttatgaatatttaaaaaataatgatcgGCAGGACTTGTTTGAAGGTCAACCTCCCGGAAAAGCTTGGGTTGATAATTTTCTGTTGCGAAACGCTTGTGACTTGACCGTACGCaatacgcaaaatatcaaaaaagCCCGAGCTGAAAAAAGTGTCGATGAGTTAGAgacatattttgaaaatttacacGAGACTGTGAAAGATGTTCCTGCGTCAAACATATTGAATTTTGACGAGACAAACCTAAGTGACAACCCGGGAAATTCAAAATGCATTTTCAAGAGAGGGGTGATATATCCCGAAAGGAACCTCAACTCTTCAAAGGCGGCCATTTCAATAATGTTCTCTGCTACAGCGGCTGGTGACATTTTACCGGTCTATGTTGTTTACAAAGCTGACAATGTATACTCGGAGTGGGTTCAGGGTGGGCCTCGTGATGCTAGATACAATCACACCAAGTCAGGATGGTTTGACTCTCAAACTTTTGAGGACTACTTCAGACGAATTGTCCTGGATTGGGCGAGTAGTTTATCTGGAAAAAAAGTCGTTATTTGCGACAATTTATCGAGCCATTTAAGTGTGGATGTTATTGAGCTCTGCGAAAGTCATGATATTCACTTCGTTTTCCTCCCCGCAAACTCAACACATCTGACGCAGCCGCTCGATGTGGCTTTTTTTGGCCCAGTTAAGAAACTGTGGCGAAAAATTTTACTTCAATATAAAATGGAGAATCCAAATCAAACGACACTAAATAAAAACCACTTTCCAAAATTATTAAAGTCTTTGACTGAACAGATCCAGTTAACAGGATCAACGAATATCAAAAGCAGTTTCAAAGCTACCGGAATCAGCCCATTCAACCCTCGTGAAGTTTTAAAACGGGTACCTGAATATCACGAAGATTTGGGTTCATATGAAATTGACGAGGCCTTACTCGACTAtttaaaacagacaagacaacCGAAGCCCATGAATGTTAGACGAAACAAAAAAGTGTTAACGGAACCAGGAAAATCAGTGACAGTCACTGACTTTCAACGACAAGTAACAAATGCGCCAAGATCAGTAGCTGGTGTACGAGGTGGTGTCAAGACTTCCAAAAGTAACCAAACGAAAAAagaaagtaatcaaaaatatagcAACAGTCACAAACTGGTCGACAATAATGGAAATTACAGCTATGAGATGGACATGATTTTAGATGAACGAACAGAACTAGTGGAAAGGACTGACATGGATGAGACACAATAA
- Protein Sequence
- MLTPLHKQQRIEASKRFLELCSEESTPILERIVTGDETWVHHFEPESKQESMQWHKKGTPPPKKFKVSESAGKIMATIFWDCEGILLIDYKEKGVNITGEYYARILEQLKEAIKNKRRGKLSSGVLLLQDNAPVHKSKVAMAALDRNKGKPKSRQRERKTRRRIGAREYKNYSQEMLELAVEYVGKNKLSARAAAKQFSIPKQTILNKVHKKHNKSVGCPTRLSAEEEAKIVKVLIAAANFGCPLTKLDLRLVVYEYLKNNDRQDLFEGQPPGKAWVDNFLLRNACDLTVRNTQNIKKARAEKSVDELETYFENLHETVKDVPASNILNFDETNLSDNPGNSKCIFKRGVIYPERNLNSSKAAISIMFSATAAGDILPVYVVYKADNVYSEWVQGGPRDARYNHTKSGWFDSQTFEDYFRRIVLDWASSLSGKKVVICDNLSSHLSVDVIELCESHDIHFVFLPANSTHLTQPLDVAFFGPVKKLWRKILLQYKMENPNQTTLNKNHFPKLLKSLTEQIQLTGSTNIKSSFKATGISPFNPREVLKRVPEYHEDLGSYEIDEALLDYLKQTRQPKPMNVRRNKKVLTEPGKSVTVTDFQRQVTNAPRSVAGVRGGVKTSKSNQTKKESNQKYSNSHKLVDNNGNYSYEMDMILDERTELVERTDMDETQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -