Esub024926.1
Basic Information
- Insect
- Eupithecia subumbrata
- Gene Symbol
- RB1CC1
- Assembly
- GCA_949316285.1
- Location
- OX438647.1:12043678-12066298[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 1.2e-09 38.7 0.1 3 38 17 52 15 55 0.95 2 2 5.7 6.2e+03 -2.1 0.0 19 28 728 737 728 737 0.91
Sequence Information
- Coding Sequence
- ATGGTTCGTACTTACAAGAAAAAAACTTCGAGAAACAGTTGGTCGGTGGAAAGGATGAAAAAGGCTATTGATGCGGTTCTTAGCAAATCCATGGGCTACAGAAAAGCGGCAGCACAGTATGACGTACCACAGACCACATTGGAGCGTCACGTGAGCAAAATAAAAAAGGGTGAACTTGTTATTGGCGAGAAACCAGGTAACTATAAGCCTGTGTTTTCTAAACAGGAAGAAAAAGAGCTTGCGGAATATCTTAAGGACATGGAAAAACGTCTTTTTGGCTTAACAACCCTCGTACTTCGAAAAATAGCATACCAGCTTGCAGTTAAAAATGGTAAGAagcataattttaataatgataaaaaaatggCTGGCGCAGATTGGGTTCAAGGATTTTTAAAGCGTAATCCAGATTTGTCCATCCGGAAGCCAGAAGCTACATCGGCAGCTCGAGCGATGGGTTTTAACAAAGTAGCTGTCGATAAATTTTACGCATTGCTCGGAGATGTGTATGATAAATACAAATTAACACCAGACAGAATATATAACTGCGACGAGACTGGTATATCAAGTGTTTCAAAGCACAAAAGCAAAATTATTGCAGAAAAAGGAAGAAAACAGGTAGGATCACTTTCTTCAGCTGAACGAGGCCAAACAGTCACGGTAGAGATATGTTTCAATGCAGCTGGAACCTATATGCACCCGATGATGATTTTTCCTCGTCAAAGAATGAAACCAGAGTTATTGGATCGAGCTCCTCCAGGTACGACGGCCGAATGCAATTCTCGTGGGTGGATGACCTCTGAAACGTTTTTGTCCTGGTTCCAGCAGTTCATTCGATTTTCTGGTGCTTCAAAGACAAACCCAGTCTTACTGCTTTTAGATGGGCATGTAACTCATACGCAAAACGTAGAGCTAATTGACATTGCACGCGAAAACGGTGTTATAATGCTTTGCTTTCCACCACATTGCACCCACAGGCTTCAGCCTTTAGATGTTGGATTTATGAAGCCTCTGAGTGTTTATTACGATCAAGCTGCCTCCAACTGGTTACGGTCGCATCCAGGGCGCGTGATAACAGCTTTTCAGCTTAGCGAAATCTTCGGGCAGGCTTACGTTCAAGCTGCAACGATGTCTACTGCAATCAACGCTTTCCGAAAATGTGGAATATGGCCTTACAACCAAAATAACTTTTCAGAAGTAGAGTTTTTGGCTGCAGCAACCACAGATATACCACTGATTAATGAAGAGCCTATTAACGTTTCCAGACCTGCTGAGAGAAATCTCACACCCCCACCCTTCATGGAAGAGAGGCAATATTCAACTACTGCCGCTTCACCACCCCAAGAAAAAACACCTGCACCTGAGCCGCAACCAGGAACGTCATCCAGAGACAGTATAATAATTGATAGTCCGGTGCGCACAGTATGTCGCGATTTAACATCTCAATTTGAGAATGCTTCCCCAAAAGATGTCATGCCTATCCCATCTGTTGAAACGAGACCCCAAAGTAGGAAAAACTATCGCCGTGGAAAGACAGTTGTCCTTACTTCAACCCCTTATAAAAATGAGCTAGAGGCTCTTAAAAGACCAAAAAAGTGTGCAGATCCGAATGATCCTcgcttaaaaaaaaacagtaagaAGAAAAAGACACAGAAGACTGAGAAGACTGCTTCCAAAGCACAGAAGGAGCACGAAGACACTCTATGTCTTTACTGTGTTGATGTTAATAACACATATTTGAAATCAACAGAGGATTGGATCGACGCAGAGCCCCTAAAAGAGAGAGAAGCGGAACTGTACAATATATTAGAATACGCGAACAACCACGGCCTGAAGCAGATCAAGGGTATAGAAGACCGGCTGTACGGGCTGGACCAACTGCTCAATGATGTGAAGAAACTGGAGCGGGATCAACGTGATCAGGCTGCTTCGCTTATACAGTACCGAGAAAGGATAAGTTCAGCGTGCGACCCTTCCGTCCTACCCACCCTAGTGCAATCGCACTGGTGTCAACTACAAAAGCTGCTGAAAGGTCATCAGAGTCTGTTCGATATACGGCGGCGTATAGCGAAATCTAAGGAAGAACTGTCACATATTCTTAAAGCTAGATTAGAAGCAGTACTCAAGATAGAAAACTCAATGTCAGTACAAGACGCGCACGCAATGCTGTCCTTCCAATGTTTCAATCGGCTCGCGCGATACTTCGGCATCGTGTCGCAGCTGCACGCCGCGCCTGCGGTCTACGTGCGCGCCGTGCACGAGGTGGCGCGCCGACGGACCTTCTCACAGGCGCATCTGAAGTGGGCAACAGACCTAGCAGAAAAACTGCTGAGAATCCACGACGAAGAAATAACAAGGCGGCAAGACTTCAACACCTTATTCGAGGGACATTTTCTTCGAAGTTTATTCCCCGGCATGACGGAACTTCCGCCGCCATTCGCGACGCAAGCGCCACCGACGTTCGACGGCAAGTTACCGCAACTGACTGATGAAGATGTGGAGTTTATAGCGAGTACTTTTCCGCAGTTGGCAGATGCGGTGCCAGGTTATGATATGGAAGCGACTGTTAGGTTTTTTCAGCAAAGGATAAACGCTTCGCAGCATGAAGAAAAAGATGCTATTATTCAAGTAGATTTTGACAAGGATTTCGAATCAGAAGCAGGCGATTTCGAGAAGCTAAGTAGACAAAGCGATGCCAAACAAACAGTAGACACATCAACAATCTGCGTTCCGGAAACAATCGCCGTCTCCATGGTAACAGAGGACAATATGGaaacacataaaataaacatagaaaGGTTCCAACAATTTCTTCTAAAACTTTACGAGTTATGCAAAGTTCACATAGTCCATATGATGGAGGAGTtaataagaataaaaacagAAATGAATCAGCAGAAAGATTTTGTCAGTAGTCAATGTTTAGTGATACTAGAAGAATGGAGAAGGAATAACGAAGCAACGGAAATAAAATTTAGAGAAGAAACGCAAAGACTTACAGTTGATCATGAGTTAGAACTAAGTGATATGAAAGCTACTCTTAACGAAAAAGATGATACCATTTCATCACTAAGAACAGAGATAGAGAACATCAAACTAGAACACCAGAAAGAGATAGACAGATTGACTGCACAACATCAAAGTACAAAAGACTTGTTGGAGGAGACGAGAGAAGAAATTGGTTCGTTTGAAATGAAACTGGAAGAAGCGGAAGCTAATAAACAGAAAGAGATTAAGAATCTACAAGAGAAGATGCATCAGGATTACAAGAAAGAGATTGAGTCACTACGTTCCAGgttccGCCTAGTAGCCCTCCAAACAAACATGGACCGCTCCCCCTCTGAATCCAGCCTGGAAAAGATCGAGCGAACCGACATAATAGAGATCTCGAGCCACAACACGATCGTGATGCAGACGAAGGAAAACGCAGAGGTGGAGAAAGAAGAGGCTGTGAGATTAGCGGTGGAGAAGTGCGAGTCGGAATGGAGCGCTAAGTTTGACGTGGAGGTCGCTTCGCTGAAAACCAAGTTCGATACTGAGAAACAGGTGACAATAAACGACGTAACCCGTCGACTGCTCTCTGAAAAGGACAGGCAGTTGGAGTTACTGCGGGAACACGAACAAGTGTTGATCAAAGAGTGCGGGAAGTACAGGGACACGATACAGCAGCTCACGGATCCTGAGACAAACGACTACGACTCATTGCTCAAAACTCAGATGGCCACCTTAGAAAACCAGAAAGCGTTACTACAACAGCAAGTGACAGATCTGAAGAAGGAACTCGAAAAGAAAGCTGAAGAGGGCGACAAAAGCAAAGAGGAAGATAGTGAGGGCAGATCATCACCAAAGAAAGAGGAAGGCCCGAAGAAGTCGAAGTCCCGATGTCACACCCCTTGCGGTCTAAGCGCCGGCACACTCAGCCTATCTTCATGCCTTCCTGGTAACACAGTGCTAGTCATGTGGGATCCTGCGCATCAAAATTACACGCTAATGCAGgagACGAGTTTTATGTTCTTCGTGCACAGCGAGTGTCTTCCCGCGCTCGATCTCAGCATTCTGGTGAAGAATGAGTCGGAAAGAAGGTTGTATGCCATCGCCACTGTGGATTCCAAGGAGTACTGTTATGCTAAGAAGAGTGGTAATCGCTTCAACATGCCGCGAGGGTCTCGATTCTACCGCGTGCGAGTCAAACCAACGAGAAATCATCCGGCGCAACCGCCTTGCTGTGACcacaaacacaaacaagATCCGCTAAAGGGTCCAGTGCTGCCCTTGTTGGGCGATCGGCCGCTCAAGAAATGGCTGACCTACGTGCATGCGCCAGATATGCAAAAGTCCTCTATAGACACAAGTCAATCGGTCAGCGCGGCTACTGACGAAGCGAATCGTATAGCCGAAGTAGCCACGGCTACTCTTATAAACTTAGAATCACCGGTGTCGACCAGCGAAGCGGTGTCAAACTCTAGTGCACAAGCACCGGAGGAGAAAGGAGAAGACCAGCTGGATTCGATAGAGGCGGGCGAACTGTGGCAGAATTCTAGGATGCAGCAGTCTACTGCCAGTAATATAACAGACATGGAAAGCAGCGTAGCGCGCTTCCCCGGCCCGGAACCCCTAGAACTAATCGTAAGCGCTGTCTCAGTTCTATCAGAAGAAACTATGCCGGAAGAAACAGCCGAGGAAGCTTCCCCGTGA
- Protein Sequence
- MVRTYKKKTSRNSWSVERMKKAIDAVLSKSMGYRKAAAQYDVPQTTLERHVSKIKKGELVIGEKPGNYKPVFSKQEEKELAEYLKDMEKRLFGLTTLVLRKIAYQLAVKNGKKHNFNNDKKMAGADWVQGFLKRNPDLSIRKPEATSAARAMGFNKVAVDKFYALLGDVYDKYKLTPDRIYNCDETGISSVSKHKSKIIAEKGRKQVGSLSSAERGQTVTVEICFNAAGTYMHPMMIFPRQRMKPELLDRAPPGTTAECNSRGWMTSETFLSWFQQFIRFSGASKTNPVLLLLDGHVTHTQNVELIDIARENGVIMLCFPPHCTHRLQPLDVGFMKPLSVYYDQAASNWLRSHPGRVITAFQLSEIFGQAYVQAATMSTAINAFRKCGIWPYNQNNFSEVEFLAAATTDIPLINEEPINVSRPAERNLTPPPFMEERQYSTTAASPPQEKTPAPEPQPGTSSRDSIIIDSPVRTVCRDLTSQFENASPKDVMPIPSVETRPQSRKNYRRGKTVVLTSTPYKNELEALKRPKKCADPNDPRLKKNSKKKKTQKTEKTASKAQKEHEDTLCLYCVDVNNTYLKSTEDWIDAEPLKEREAELYNILEYANNHGLKQIKGIEDRLYGLDQLLNDVKKLERDQRDQAASLIQYRERISSACDPSVLPTLVQSHWCQLQKLLKGHQSLFDIRRRIAKSKEELSHILKARLEAVLKIENSMSVQDAHAMLSFQCFNRLARYFGIVSQLHAAPAVYVRAVHEVARRRTFSQAHLKWATDLAEKLLRIHDEEITRRQDFNTLFEGHFLRSLFPGMTELPPPFATQAPPTFDGKLPQLTDEDVEFIASTFPQLADAVPGYDMEATVRFFQQRINASQHEEKDAIIQVDFDKDFESEAGDFEKLSRQSDAKQTVDTSTICVPETIAVSMVTEDNMETHKINIERFQQFLLKLYELCKVHIVHMMEELIRIKTEMNQQKDFVSSQCLVILEEWRRNNEATEIKFREETQRLTVDHELELSDMKATLNEKDDTISSLRTEIENIKLEHQKEIDRLTAQHQSTKDLLEETREEIGSFEMKLEEAEANKQKEIKNLQEKMHQDYKKEIESLRSRFRLVALQTNMDRSPSESSLEKIERTDIIEISSHNTIVMQTKENAEVEKEEAVRLAVEKCESEWSAKFDVEVASLKTKFDTEKQVTINDVTRRLLSEKDRQLELLREHEQVLIKECGKYRDTIQQLTDPETNDYDSLLKTQMATLENQKALLQQQVTDLKKELEKKAEEGDKSKEEDSEGRSSPKKEEGPKKSKSRCHTPCGLSAGTLSLSSCLPGNTVLVMWDPAHQNYTLMQETSFMFFVHSECLPALDLSILVKNESERRLYAIATVDSKEYCYAKKSGNRFNMPRGSRFYRVRVKPTRNHPAQPPCCDHKHKQDPLKGPVLPLLGDRPLKKWLTYVHAPDMQKSSIDTSQSVSAATDEANRIAEVATATLINLESPVSTSEAVSNSSAQAPEEKGEDQLDSIEAGELWQNSRMQQSTASNITDMESSVARFPGPEPLELIVSAVSVLSEETMPEETAEEASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -