Esub028331.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751125.1:1095392-1116711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.8 7.1e+02 1.8 3.1 1 23 423 445 423 445 0.83 2 11 0.69 56 5.3 4.8 1 23 452 475 452 475 0.94 3 11 0.019 1.5 10.2 2.9 1 23 479 501 479 501 0.98 4 11 6.7e-05 0.0054 17.9 0.4 1 23 506 528 506 528 0.99 5 11 3.3 2.7e+02 3.2 4.0 1 23 532 555 532 555 0.94 6 11 0.4 33 6.0 1.1 2 23 567 589 567 589 0.96 7 11 3.9 3.2e+02 2.9 0.1 5 20 599 614 597 619 0.91 8 11 0.00039 0.031 15.5 0.3 3 23 733 753 732 753 0.98 9 11 0.11 8.8 7.8 0.2 1 23 759 781 759 781 0.95 10 11 8.7e-06 0.0007 20.7 0.6 3 23 788 808 787 808 0.97 11 11 0.00094 0.076 14.3 0.1 1 23 814 837 814 837 0.96
Sequence Information
- Coding Sequence
- ATGGATACTGTGTTATGCCATATTTGCCTCCGCACGGACATAACCGCTGTAAACATAGCTACGGAACTTGCCTATTTCATCGATGAACTATGCGACTACAACATTATCAAGAATCCAAGATACAAGTACTGTACAATTTGTGCCCATCTGCTGAAAAAGTTCTATAACTTCAAACAGCGATGCTTAAAAGCCTGCAAGATTCTAAAATCCCTTGATGGGGGGCATAAGttCTTACCTTCAGATCTTCATGAACAGATACCTTCATCATTAGGACTCTGTAGCAGCTTGGCTCCCTACAAGTTGTTGGAGCACCAACATCACACTGAAACTGATTTACTTGAGACCAAACCTGATCTCCACATTGAACCTAACATCACACCAAACGACATAGAAGTATACAACTTAGAAACTGCTGACCCCATACTACAAGACCATATCGAAGTAAAGGATGAGCCAGTGCATGATGTACCAGAATCTAATGTTAAAACATTGCAAGCCGCGGGTGGTAAAAACCTTTACCTTATTACTACAAGTGACGGTAACTTGATTTTAAAAAGCGATTTCGAAGATGAAATAGGAAGCCTTAAGTACAATAAAAAGGAGCTTAATACCGATGGGAGGaacaaaaatgtttcaaaaCATAATGCAGAGCAATCCAAAATCTGTGATTTCCTTAAAAGCTTTGAGGAAGAAATTATAGATGATGATAATCCCGTTGATGCGAATTATATGGAAGTTGAAGATAGTACATATCTGTTAAATAATGATCCTATAAAGGATGATGAAAGTTTAAACTCTATGGATGATATAGAGAGTGATTTTAGTGATTGTGATGTTAAAAGTATAAACATAGATGAACAAAACGCTGAATCGAATGCTGATTCAGACTCGGATACAGACAGTCTAATTGAATTCTTCGAAAATGCTAAAAACAAGAAGCTACAATTTTTAAAAGGCAAAGCGAAAATACAAAATGATCTCTTAAAGTTGTTTGAAAATGACGGGTATGACTTAGGTGATGGGGTCAAGATCAGCAAACAGGTGTTCCTCAAGATGTATGAAAGATGTGAAAATAACTCCTCCTCTCATCATAATCTTAAAGACACGTCggataaaaagaaaattgacACCTTCCTTCGCTTTCTCCTCAAGATGTACAACCCAGAGTATGAAGCGGTGTTCGACATTGAATACCTCGATACCGAAGAGAAAAAACTACAGGAGTTCGACCGGCGCAAGAGCAGCGCGGAGTACTGCAGCGCTCCGTACCGATGCACGCGCTGCTACAAAGGATTCCAGCTGGAGGGGCTGCATGCCTACCACATGAAGAAACACGACGAGTCGTCTGGCGCGCACGAGTGCCACATCTGCACGGTCCGGTTCTTCAGCGCGGCATCGCGCCGCGCGCACGTGAACTACTGCCACTCGGCCGTGTACGTGTGTCGGCAGTGCCAAGTCACATTCTACTACTTCTCGAGCATGAAGAACCACTACGATACGCACAAAGGAGTGGAGTACCGGTGTCCACAGTGTGACGGCATATATCGCACCAACTCGGCCTTGTTGAACCACAAGCGCTCCCACGCGACGTCGCATATATGTGCCACGTGCGCTAATTCATTCGTCTCGGCGTATGGACTCCACCTGCACAGGAAGCACAAACACAGGGGCGCGCCGGAGCCGGGGCCTGGCGCGGCGCGCTGCACCGAGTGCAACCTCACGCTGGACTCGCACGTGGTGTACGAGAGACATCTGAAGATCTCGCATCGACTTACTACAGACCGCTACTCCTGTATATGTTTAGAGAAGTTCCCAACCTTGGCGGCGCTGAGGAAACACAAGGTTGAACAGGGACATTTGCGTTGCGATGATATAAAACCAcCATCAGTCGCACCTTACGAGAAGAGAAAAAGAAAGAGTACAGGCACATCAGGCAAGAGTAAAGGCACATCAGGCAAGAGTAAAGGCACATCAGGCAAGGGCGAGACTAAAGGCAAATCAGGCAAGTGTAAAGACACATCAGGCGAAAGTATGGGCACATCAGGTAACAGTAAAGGCACATCAAGCGTGAGTAAGATACATCAGTGCCAGGAGCAAGTCCCGAACAAGTTCGGCTCGTCGCTGTACTGCCACTTCGCGGAGCGCCACCCCGGCGTGCCTTACCGGGCCGAGGGCATGCTGCGGAGGGACCTGCTGTGTGAGCAGTGCGGGCAGACCTTCAACTACGCGGCCCAGCTCTACGACCACAAGAACACGCACCTCGGGCTCCGCCCCTACCCCTGCGGCGTGTGCCCCGCGCGCTTCCCCTCGCGCCAGCAGCGCTCCACGCACCGCGCGCAGCACAAGGCGCCGCTAGCGCCGTGCGAACGCTGCGGGAAGACATTCAAGTCCTGGCCCAACCGCTTCGCTCACATGCGGAGTCACGCAAACATCCGTTGCTTCAAGTGTAAGATATGCGGCGCGGGGTTCGCGCATCCCGCCCGCATGCGGGAGCACGTGCGGGGGGTGCACCTGCGGCAGAGGAGGCTGCGGGCCTCCCGCAAGCAACCCCTCGAGAGCAAGGGGGCACAGCCGCTGGAGGACTAG
- Protein Sequence
- MDTVLCHICLRTDITAVNIATELAYFIDELCDYNIIKNPRYKYCTICAHLLKKFYNFKQRCLKACKILKSLDGGHKFLPSDLHEQIPSSLGLCSSLAPYKLLEHQHHTETDLLETKPDLHIEPNITPNDIEVYNLETADPILQDHIEVKDEPVHDVPESNVKTLQAAGGKNLYLITTSDGNLILKSDFEDEIGSLKYNKKELNTDGRNKNVSKHNAEQSKICDFLKSFEEEIIDDDNPVDANYMEVEDSTYLLNNDPIKDDESLNSMDDIESDFSDCDVKSINIDEQNAESNADSDSDTDSLIEFFENAKNKKLQFLKGKAKIQNDLLKLFENDGYDLGDGVKISKQVFLKMYERCENNSSSHHNLKDTSDKKKIDTFLRFLLKMYNPEYEAVFDIEYLDTEEKKLQEFDRRKSSAEYCSAPYRCTRCYKGFQLEGLHAYHMKKHDESSGAHECHICTVRFFSAASRRAHVNYCHSAVYVCRQCQVTFYYFSSMKNHYDTHKGVEYRCPQCDGIYRTNSALLNHKRSHATSHICATCANSFVSAYGLHLHRKHKHRGAPEPGPGAARCTECNLTLDSHVVYERHLKISHRLTTDRYSCICLEKFPTLAALRKHKVEQGHLRCDDIKPPSVAPYEKRKRKSTGTSGKSKGTSGKSKGTSGKGETKGKSGKCKDTSGESMGTSGNSKGTSSVSKIHQCQEQVPNKFGSSLYCHFAERHPGVPYRAEGMLRRDLLCEQCGQTFNYAAQLYDHKNTHLGLRPYPCGVCPARFPSRQQRSTHRAQHKAPLAPCERCGKTFKSWPNRFAHMRSHANIRCFKCKICGAGFAHPARMREHVRGVHLRQRRLRASRKQPLESKGAQPLED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -