Esub025016.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751118.1:10791312-10804357[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0013 0.11 13.8 4.1 1 23 141 164 141 165 0.97 2 9 0.97 78 4.8 8.7 1 23 171 193 171 193 0.97 3 9 0.0019 0.16 13.3 8.2 2 23 225 247 224 247 0.97 4 9 0.00012 0.0097 17.1 0.5 1 23 251 274 251 274 0.96 5 9 0.32 26 6.3 0.7 2 21 288 307 287 312 0.92 6 9 0.35 28 6.2 7.5 2 23 331 353 330 353 0.94 7 9 1.9 1.6e+02 3.9 0.1 3 20 376 396 374 398 0.63 8 9 4.1e-05 0.0033 18.6 0.3 1 23 401 423 401 423 0.98 9 9 9.9e-06 0.0008 20.5 1.7 1 23 429 452 429 452 0.98
Sequence Information
- Coding Sequence
- ATGGAGGAAGACACATCAGAGCTTGTTCGAATATGGCGAGAAAAGAAAATGGGTGTAGCAGTAGAGGTGAGAGCAACGGATGAAAAAGCTCACAACTTCGTCAAGCAAGAATGCTCCGTACCAGAAATGATGAATCTAACGAACATCCACCCTGACAGCTTGCCCCCAAACGCACACCAGCATCTCGAGCAACGACCTATGGAACAGCAGAGATTCAGCCAGCACTCAATATTTGGGGGTATATCCAGCTCAGATCCACTATGGATGCCTCCCGAAGATCCTCCCCCTCCCGCAGAAAAGAAAGCTTCAAAAAGCTCCTTCCTAGACCCTGCTAACTGGAACCGCACCACGTTGAATGACGATGAGGCGATTATTAAGTTTAATAAGAGAGCGAGTAATGCCAGGTTTACAAATGGACGGTTTAAATGTCATGAGTGTTTTTCTAATTTTGCAAGGGAGGAGAAATTGAATAAGCATATAATGATCAATCATCATGAGAGCGCGGGCCCCCACATGTGTCGGTTCTGCAAGCGACGCTTCCAAAAACCTTGTAAGCTGCGGATGCATGTGAAGAAGCATTACGTACAGATCGAGTGTCTACGGTGCAACATGCAGTTCGATGGAGAGGGCCTTGCTTTCCAGCATGAGGAGTTCCACCGAGGGGTCACCACCACATGTAAATACTGCAATCATCAGTTCAGACACAAATCAACATACTACCAGCACCTACGCACGCAGCATCGCAGCTCGCACATCTGCACGCTCTGCGGCGCCTCCTTCGTCAGCAAGGCGGGGCTCAATGTGCACAAGAAACGACTGCATTCTGACAAGAACATGCCCAAAGAACCAGACGCGAATATATACTGCCGTCGCTGCGACATTAAGTTCGCGTCCATGCAAGCCTACCAGGAACACTACCGACATTCAGCGCTACACGCGGACGGCGTCGATGTGTACGTGAACGATGACGTCAGAGGGGCTAACTACGTTCGTTGTACAGTGTGCCACGAACAATTCTTCACGTACCAAGCGTGTTTGAAGCACCACCGGCGCATGCACCCCGACACGCCCTTCATGAAGAAGTCTGTCGCCAGTCCGACGGCCGCCAGCAGCGAGAGGGTGAACTGCGATATATGCGGCGTGCTTATCAAGGCGACCAGTCTGTACACACATATGAACGCACACACGCGCACTAAGGTGTACACGTGTCAGATCTGCGGCATGCAGTTCCCTTACCCCACCTCGCTGCTCAGGCATAAAGTGacgcATACCGGTGAGAAAAAATACCCATGTCCGCTCTGCGAGAAACGATTCACGCAGAGGAACAGCATGCAGCTGCATTACAGGACCTTCCATCTCAAGGAGCCCTATCCTAAGAGGAATCGCCGCAAGAAGACAGCGGAGCCGGAGCCTGTCGCGCAGCCCCCGCCCGCGCAGCACGCGCAGCACGCGCCGCATCCGCACCACGCGCACGTCTCGCTGATAGGCCTCTAG
- Protein Sequence
- MEEDTSELVRIWREKKMGVAVEVRATDEKAHNFVKQECSVPEMMNLTNIHPDSLPPNAHQHLEQRPMEQQRFSQHSIFGGISSSDPLWMPPEDPPPPAEKKASKSSFLDPANWNRTTLNDDEAIIKFNKRASNARFTNGRFKCHECFSNFAREEKLNKHIMINHHESAGPHMCRFCKRRFQKPCKLRMHVKKHYVQIECLRCNMQFDGEGLAFQHEEFHRGVTTTCKYCNHQFRHKSTYYQHLRTQHRSSHICTLCGASFVSKAGLNVHKKRLHSDKNMPKEPDANIYCRRCDIKFASMQAYQEHYRHSALHADGVDVYVNDDVRGANYVRCTVCHEQFFTYQACLKHHRRMHPDTPFMKKSVASPTAASSERVNCDICGVLIKATSLYTHMNAHTRTKVYTCQICGMQFPYPTSLLRHKVTHTGEKKYPCPLCEKRFTQRNSMQLHYRTFHLKEPYPKRNRRKKTAEPEPVAQPPPAQHAQHAPHPHHAHVSLIGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00701505;
- 90% Identity
- iTF_00706469; iTF_00699633; iTF_00704466; iTF_00698709; iTF_00700536; iTF_00702429;
- 80% Identity
- -