Esub028389.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751125.1:2000802-2015042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.86 11.0 0.6 1 23 302 324 302 324 0.97 2 17 0.0033 0.27 12.6 0.5 2 23 332 354 331 354 0.94 3 17 1.6 1.3e+02 4.1 1.0 1 21 387 407 387 410 0.80 4 17 0.08 6.5 8.3 0.0 2 23 422 444 421 444 0.95 5 17 0.013 1.1 10.7 0.2 2 23 461 483 458 483 0.92 6 17 0.013 1.1 10.7 0.2 2 23 500 522 497 522 0.92 7 17 0.013 1.1 10.7 0.2 2 23 539 561 536 561 0.92 8 17 0.1 8.2 7.9 0.2 2 23 578 600 575 600 0.91 9 17 0.013 1.1 10.7 0.2 2 23 617 639 614 639 0.92 10 17 0.1 8.2 7.9 0.2 2 23 656 678 653 678 0.91 11 17 0.0026 0.21 12.9 2.9 1 20 684 703 684 708 0.94 12 17 0.00074 0.06 14.6 1.0 3 23 735 756 734 756 0.94 13 17 0.36 29 6.2 0.3 2 23 763 786 762 786 0.89 14 17 0.0027 0.22 12.9 2.4 3 23 852 872 850 872 0.95 15 17 0.0029 0.24 12.8 0.7 1 23 878 900 878 900 0.97 16 17 4e-05 0.0032 18.6 1.6 2 23 906 927 906 927 0.98 17 17 0.0019 0.15 13.4 0.3 1 23 933 956 933 956 0.96
Sequence Information
- Coding Sequence
- ATGTCGGTTTTATGCCGTATATGTTTGCAATCCAATATTACTGATAGCAAACCAAATGACAGCATTCTTGTGGAATTTCACTACGATTTGTGCGAAAAAGATaaaaatCTAGACAGTGACATTTCATCTGATACActacaaaatgaaaacaatgcaCCGAAATGGTCAGAAGCCAAGCAAAAAGAAAACAGAGAAACAACATGGCCAGAAGCCAAGCAAACTGAAAACACTGAACCAGAATGGCCAGAAGATAAGTTTTCGCAGAGTGAAAgcccaaaaataaaaatcgaatGTACAgaaaacaccattataaatatcGAACTAAAACCAGAGATAGAAGAAGGTATTACATTTAAAGTTCTAGACAATTACTATTGTAGCGATATCTATAACaactatgatgatgatgaagattatAAACCtgaaaagagaaagaaaaaacaaaagaaagaaaaagtaaaagaaaaaaacaaatacatcaAAGAAAGAAGTAATAAGATCAAACTCGGCAAAGAAACAAGTCATAAGAACAAACTCAGCAAAGAAACAAGTCATAAGATCAAACTCAGCAAAGAAACAAGTCATAAGAACAAACTCAGCAAAGAAACAAGTCATAAGATCAAACTCAGCAAAGAAACAAGTCATAAGAACAAACTCAGCAAAAGAACAAGCAATAAGAACAAACTGAAAGATAGAATATTGGAGTTGTTAGAGCGAGATGAATTTAAAGATTTAGACACAAAAGAAGAACTAGAATGTTTAAAAAAGTTCCTCCTACACCTTCTTATAAAGAACAATCCAGAATACGAAAAAATGTTTAACATTGAGAGATTAGACACAGAAGAGCTCAAACTACAAGAGTTTAACGCAAGAAAGCTGAGTAAGGAGTATTTGGAGGCGGAGTACAAATGTGAAGTTTGTTATAAAGCGTTTGATGCGCAGAGACTTTTGGATTATCATAGGAAGTGGCATGAGCCTACACCTGGTTGCATCACATGTTCAATTTGCTTGAtgcgcttcgctcgccgcaagtCGCTCGCTCAACATCTGAAAGACAATCATTGCGCTGTGTACCGCTGCAGGCTCTGTCCACTGCTAACTTACAACTTCAATAAAAGTACTATGAACAACCACAGACTGCAAGCGCACAAAACCGCGCATATCTGTCCTTTATGCGCGCGAAGCTTCGTGTCAGAGAAAGGACTGTACTTTCACAAGCAACTTAAACACAAGGATGAAGTGACATGCCAGTCAACCACGTGTGTGTGCAACACGTGCGGCGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATGTGCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATATGCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATATGCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATATGCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATGTCCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATATGCGGCTGACGCACAGCGCGCTCACAATGATAGAACAGATCGTGCAAAAGTTATACACGTGTACGTGTAACACGTGCGACGCCGCGCTCGGCTCGCCGCAGCTGCTGGCCGCGCATGTCCGGCTGACGCACAGCGCGCTCACAATTCACAAATGTTTCCACTGCAAGGAAGTGTTCCGTACACTTGAGGAGCTGAGGCAGCATAAAGTCGCCAACAACCACCAAAGGTCGCCTCGGACGGCGCTCAAGAAACGCATCGACAACACGGTGGTTCCTCTAAACAGCGACGAGAATCCATATTGCGCAGCGTGCGACAAATCATTCAGCACTCGCAAAGGATATCTCCGGCATTACAATACCAACCACAACGTTAATAGAATCCAAAAATGCGGATTCTGCCAAGCCAAGTTTACGTCGACAGAGGAGATAGAAGCGCATAGAGCCACCTACAACCATCACCCGAAGGTTCGCTATGTGAAGCGACTGACCAGCACCGCCAAATCGGCGCGAACTGACACGAACAACAAGTGTGAACTGTGTGGAGAAACCGTAGGCACGGGCCGAGTGCGAAGCATGTACCAGCACTTTCTGACGTCACACCCGGACACGCCCTACTGGTCCGTCTACCGGCGGCCGCAGAGCAGACATCTCTGCGAGCTCTGCGGGAAGACATTCAAGGACCTGCGTTTCTTCCTCGACCACCGCAACATCCACTCCGGCGCCCGTCCGTACGCCTGCTCTATATGTGCCCGCACGTACGCCACCAAGCGTCACCTCGGCTGGCATACAGCGCGCCACGGACCACCGCGCCGGCAGTGTAAAGACTGCGGGAAGTTATTCCATAGCGCAGCCAACCTGTTCGCGCATACACGAAGTCACGTGGGCGACCGCCGCTTCAAATGCGACATCTGCAGCAAGGGGTTCCTACACCAGGCTGCGCTTAACGAGCACGTCAGAGGGGTACACAACCACATACGACGCGCCAGAAAGTGTAGGGACAAGTGA
- Protein Sequence
- MSVLCRICLQSNITDSKPNDSILVEFHYDLCEKDKNLDSDISSDTLQNENNAPKWSEAKQKENRETTWPEAKQTENTEPEWPEDKFSQSESPKIKIECTENTIINIELKPEIEEGITFKVLDNYYCSDIYNNYDDDEDYKPEKRKKKQKKEKVKEKNKYIKERSNKIKLGKETSHKNKLSKETSHKIKLSKETSHKNKLSKETSHKIKLSKETSHKNKLSKRTSNKNKLKDRILELLERDEFKDLDTKEELECLKKFLLHLLIKNNPEYEKMFNIERLDTEELKLQEFNARKLSKEYLEAEYKCEVCYKAFDAQRLLDYHRKWHEPTPGCITCSICLMRFARRKSLAQHLKDNHCAVYRCRLCPLLTYNFNKSTMNNHRLQAHKTAHICPLCARSFVSEKGLYFHKQLKHKDEVTCQSTTCVCNTCGAALGSPQLLAAHVRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHMRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHMRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHMRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHVRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHMRLTHSALTMIEQIVQKLYTCTCNTCDAALGSPQLLAAHVRLTHSALTIHKCFHCKEVFRTLEELRQHKVANNHQRSPRTALKKRIDNTVVPLNSDENPYCAACDKSFSTRKGYLRHYNTNHNVNRIQKCGFCQAKFTSTEEIEAHRATYNHHPKVRYVKRLTSTAKSARTDTNNKCELCGETVGTGRVRSMYQHFLTSHPDTPYWSVYRRPQSRHLCELCGKTFKDLRFFLDHRNIHSGARPYACSICARTYATKRHLGWHTARHGPPRRQCKDCGKLFHSAANLFAHTRSHVGDRRFKCDICSKGFLHQAALNEHVRGVHNHIRRARKCRDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -