Esub029408.1
Basic Information
- Insect
- Eupithecia subfuscata
- Gene Symbol
- -
- Assembly
- GCA_963564075.1
- Location
- OY751126.1:6856722-6860550[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.039 3.1 9.2 3.4 1 23 113 135 113 135 0.94 2 23 0.0044 0.35 12.2 2.5 1 23 204 226 204 226 0.97 3 23 0.26 21 6.6 0.3 1 10 230 239 230 252 0.76 4 23 0.018 1.5 10.3 2.1 2 23 257 279 256 279 0.96 5 23 0.13 10 7.6 1.0 2 23 284 306 283 306 0.95 6 23 0.00015 0.012 16.8 0.8 3 23 343 363 341 363 0.98 7 23 0.004 0.32 12.4 2.1 2 22 370 390 369 390 0.96 8 23 0.061 5 8.6 4.1 1 23 431 453 431 453 0.96 9 23 0.18 15 7.1 0.0 2 23 482 504 481 504 0.96 10 23 0.049 4 8.9 0.7 2 23 525 547 524 547 0.94 11 23 0.0014 0.11 13.8 3.2 3 23 554 575 553 575 0.97 12 23 0.013 1.1 10.7 0.6 1 23 580 603 580 603 0.94 13 23 0.22 17 6.9 0.1 2 23 606 628 605 628 0.95 14 23 0.0077 0.62 11.4 1.2 2 22 635 655 634 655 0.93 15 23 0.0023 0.19 13.1 0.4 1 23 712 735 712 735 0.95 16 23 0.68 55 5.3 0.2 3 23 764 785 762 785 0.92 17 23 0.06 4.8 8.6 0.2 3 23 809 831 807 831 0.95 18 23 0.00072 0.058 14.7 0.4 3 20 838 855 836 859 0.90 19 23 0.14 12 7.4 0.9 1 23 864 887 864 887 0.96 20 23 0.0022 0.18 13.2 0.6 2 23 893 915 893 915 0.94 21 23 0.00029 0.023 15.9 5.0 1 23 919 942 919 942 0.97 22 23 0.00067 0.054 14.8 0.6 2 23 949 970 948 970 0.96 23 23 0.0071 0.58 11.6 2.3 1 23 976 998 976 998 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTTTACTTGTTGAGAGAGTTGGATCCCTTCTtgagtaaaggcctcctccatcttcATCCACGACTGTCTGTCGATTGTCTGGCTCACCCAGCTTCTTCCCGCTATTTGGATTATGTCATCAGCCCACCGTCTATACGGTCTGCCAACATTTCTTTTGCTATCTGGTCCCTTCCATCGTGTGGCAATACTGGCAATCCCGTGCCCGAGCTGTCAGAAAAAGTCCGTAAGTCGAAACTGACTTCCACAAAACTCAACCGTATGAGAAACCATAACACGATAACCATCCTGCAAAACAGTACGGCAATTCCTTTCAAATGGCATCGACAGTTCTACCTCTGTTTCTACTGCCATAAACCCTTTTCCACCTTTAATGAAGTAAAAGAGCACACAAGCCAGCATAAAACTGTCAACATAAAATCAGCTGTGACATTCCTATGCGCAAACGATAAAGTCAAAATCGATATCACCTCCTTCAAATGCAAATTATGCGATCACGAACTCTTAAACATACATTCTTGCATGGACCACTTAAAGCTAACACATGGGAAAGTCTTCGAAGAAGCTGACATAGGTGTTATACCATACAAACACGAGCTGGACTCTTTCGACTGCGGTATTTGCAATGAGAAATTCCACTACTTCGTCAAGTTGAATCAACACATGAACTCCCATTATGGGAACCACGTTTGCGAGACTTGTGGGAAATCCTTCCTCAGCGCTGCAAGGCGAAGACTGCACTCACTAATCCACGCTAGCGATGTCCAATGCGAGCATTGCCCTGAGAAATTCAGGTCTTTGTCTATGAAGAACTATCACGTGAATAAAACACACCAATCTAACGTGAAATGCAGCTTCTGCTCCGAACAATTCGCTAGCTACAAGCAAAGAAAAGTCCATCTAAAGTTAATTCACAATGTAGGATCGCTACACGCTTGCCCGGTCTGTAGCCGAGAGTTTCACTGCAAGAGTCGTATGgaatatcatttgaaaggtgtACATTATAAGGAGAAGCATTTTGGTTGTACTATGTGTGATCAGAGTTTCTTTTCGAACTGGCAGTTGACAAAACATGTTAAGATTCATGAAATGGGTCGGGGGAGTCAGTGCGAGTTGTGTTGTAAGACTTTTTCTAAAGCGAGTAGCTTGAAAGAACATCTGAGGACTTGTGTTAATGTTAAACCGCGAAAATACAAGGGTACGGAATCTTCTTCGATGCGCCGAAGAAAAAATCTGCAAATTATATTCAACAATACTTCAATTATACCATTTAAATGGCGAGGGAAGTATCTATGCTTCTATTGCAGCAAACATCTAACCGAATATGAAGATTTACGCAAGCATACAAAATCTCACGGAGATTGCTCAATCCTTGATCATTCGTTGAAAGTCTTGAAAGGCGGCACAAACATGGAAATTAAAATTGACGTGTCACATATAAGTTGTGAATATTGCGGTGTAAATGTAGCTTCTGTTGATAGTGTAATAGATCATTTGAAAACTATGCATGATATAGATTACGATAACGAAGTAGACATGGCTACAGAGGCATACAAACTTGCTGACCTCAGCTGTTTGTCTTGCGAACAGAAATTTACTTACTTCGGATACTTAGTCTCACATATGAATAATCAACACCCGAAAAACTGCATCCTCTGTGATAAATGTAAccaaaaatttaataagaaaCGAGATCTCTTCTCGCACATGAAAAACTATCATAGAGAAGGGGGATACCCATGCGATGTGTGTCCACAAACGTTCAACTCTCTAAATATCTTGAGAAAACatagaagtaataaacatttgACAAGATGCAACATATGTCAGCTGAGGTTACCTTCAGCGGCGTTGAAGCAAAAACATATGGACGTTGAACACCCAGATGACGGCTCCTTGCAATGCGAAAATTGCACTAAAGAATTCCACACAAAAACAGGACTTAGAATGCACGCGAGAAAATGCAAAATAGATTTCGAATTCGCTATCAAAAAGGAAGATCTTACAATGGATCTTGATCAGAATTACGATAATCCGCCTAAAGGACCGAGCGTCAAGCAAATCCGTGAAAACATCGTAATTGTCATCAACATGTCCACAGCAATTCCTTTCAACTTCTACAAGAACAAATTCAACTGTTTCTATTGCTCCAAAGACTTCCCCGATTCAGATTCTATGAGAGAACACACTATAGTAGAACATCCTGTTTGCAACATCACAGAGAAATGCATTAAAAAGTGCAGAGAGACCGTCACTTGCGTTAAAATTGACATATCCACTCTAGCTTGCAAACTCTGCTTCGAAACATTATCCGATTTCGACAAACTCCTCGATCATTTGATCCTAAAACACAACGCCAGCTACGATAAAACTATAACAACATGCCTCCAACCATACAGACTTGTCAAAGACCACATGGCTTGCCCCAACTGCCCGACAGAAGTCTTCCGCTTCTTCGGAACCCTTCTAAAACACATGAACAAAGAACATACGAATAATAACATCATATGCGTGTATTGCGGCGAGACTTTTCGACGCGATCAAAACCTACGAGTCCACATATGGAGGCATCACCGCGACGGTAGATTCAAATGCACGATCTGCAATACTGACTGCGGTATACCCTCACGACTCTACATGCACATGGCAAAAGAACACGGCGTCAAAGCTGCAAAATGTCCGAAATGCTCCGAAACTTTCGAGACCCAATACCTCCGCCAAAAGCATTTGATCGAAGCTCACGATTCCGGACACAAATGCACGTTCTGCGGGAAGCTCTTTACAAGAAACTCTTTCATGAGAGATCACATACGCCGTACGCATTTGAAAGAGAAGAATGTGGAGTGTAGTATCTGCAGTATGAAgttttttaacaatattttgttGAGGAGGCATATGGTTAAACATAGCGGAGAGAAGAACTTCCATTGTGATGTGTGTGGAGAGAGATTCTTCTGGAGGAAGAGTCTCAGGACGCATATGGCGAGGCATAACAAACAAGTCCAGCTTGTGTAG
- Protein Sequence
- MSVYLLRELDPFLSKGLLHLHPRLSVDCLAHPASSRYLDYVISPPSIRSANISFAIWSLPSCGNTGNPVPELSEKVRKSKLTSTKLNRMRNHNTITILQNSTAIPFKWHRQFYLCFYCHKPFSTFNEVKEHTSQHKTVNIKSAVTFLCANDKVKIDITSFKCKLCDHELLNIHSCMDHLKLTHGKVFEEADIGVIPYKHELDSFDCGICNEKFHYFVKLNQHMNSHYGNHVCETCGKSFLSAARRRLHSLIHASDVQCEHCPEKFRSLSMKNYHVNKTHQSNVKCSFCSEQFASYKQRKVHLKLIHNVGSLHACPVCSREFHCKSRMEYHLKGVHYKEKHFGCTMCDQSFFSNWQLTKHVKIHEMGRGSQCELCCKTFSKASSLKEHLRTCVNVKPRKYKGTESSSMRRRKNLQIIFNNTSIIPFKWRGKYLCFYCSKHLTEYEDLRKHTKSHGDCSILDHSLKVLKGGTNMEIKIDVSHISCEYCGVNVASVDSVIDHLKTMHDIDYDNEVDMATEAYKLADLSCLSCEQKFTYFGYLVSHMNNQHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYPCDVCPQTFNSLNILRKHRSNKHLTRCNICQLRLPSAALKQKHMDVEHPDDGSLQCENCTKEFHTKTGLRMHARKCKIDFEFAIKKEDLTMDLDQNYDNPPKGPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTIVEHPVCNITEKCIKKCRETVTCVKIDISTLACKLCFETLSDFDKLLDHLILKHNASYDKTITTCLQPYRLVKDHMACPNCPTEVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCTICNTDCGIPSRLYMHMAKEHGVKAAKCPKCSETFETQYLRQKHLIEAHDSGHKCTFCGKLFTRNSFMRDHIRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKQVQLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -