Esub027254.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Eupithecia subfuscata
Gene Symbol
-
Assembly
GCA_963564075.1
Location
OY751123.1:1391904-1425185[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.02 1.6 10.1 0.2 1 23 489 511 489 511 0.97
2 12 3.3e-05 0.0027 18.9 0.6 1 23 521 543 521 543 0.98
3 12 7.9e-07 6.4e-05 24.0 2.5 1 23 549 571 549 571 0.99
4 12 0.0032 0.26 12.7 2.0 1 23 578 600 578 600 0.99
5 12 3e-05 0.0024 19.0 0.5 1 23 606 628 606 628 0.96
6 12 4.2e-06 0.00034 21.7 0.2 1 23 634 656 634 656 0.97
7 12 4.9e-05 0.0039 18.4 1.9 1 23 662 685 662 685 0.95
8 12 7.2e-06 0.00059 21.0 1.1 1 23 691 714 691 714 0.94
9 12 4.4e-05 0.0035 18.5 2.9 3 23 722 742 721 742 0.99
10 12 3.6e-05 0.0029 18.8 1.1 1 23 748 770 748 770 0.97
11 12 0.03 2.4 9.6 0.0 1 21 776 796 776 797 0.96
12 12 0.019 1.6 10.2 0.0 1 21 808 828 808 832 0.91

Sequence Information

Coding Sequence
ATGAAAAGCTGCCTTGTGTGCGGGTCTCCAGGACCGTTCGGGAGAGACTATGTCCTGAATGTATTTGATGAAAATaacaCAACATGTGAAAGAAAATTAACAGAAGCATTAAGTGACATGATTGACAAGGAGTTGAAAGAAGATAGTGTACACACCACGATACTTTGCAAGGAGTGCCTTGACTTGTGCATCAACTATGACATGTACAGGGctaaCATGGCAGTAATTAAGACAACAATTTCAAAGCAGTTCTATGAAACTTTAGAAAAGCTTACCATAGCCATCGCTCCTGTCGTCACACCTAAAAAGGAAATCAAAGGAAAGTTTGTGGTACCAGCGTCGAAGCTGCAGCCTTTGCCGGCGGATTACCAACTCAATTTGGGAAAAATAGCGGCGCTTGCTTCTAGTACACAAGCTAAGAATCAAAAACCCCTGCTCAACCTAAAAGTAACCATCGGCAATTCAGTTCTTACACAGTGCCTAACGACATCTACCGTCAAGATGATGAAACCTACCGAGCTGTCaaactcgaaaaacataaacgTCATCGCCGATTGGAATGACAGTCTGCCGAGCGAGATCTTTTCGAGTAATGATAATAATGAAGATATGGAAATTGATGAAGAATGCAACGTGGCGGTGCCGGTTTCCGAAAATGATCCCGTTATGATAGATGCAAACAATATAAAGAATGAAAACTCTGAAAATCCTCAGTACATAAACGCAGAGAACTTTGAACTGTTATATGAAGGGCAGGAGGACGGAGAACCACgcAAAACCGTGCCCGTGACAGCGGTTGTGACACGAACTTGTGCGAAATGTCACCGTAGTGCAGTCGAAGGGAAGGGCATGCGATTCCATAGATTTCCCTTGCCTGGGAAATATGGGCCTGCGAGAGCTCGCGTGTGGGCAGAGTATTGCTATCCAGAAGGCAACTGGTCCAACATGAAAAGCCTAGAACAGCTATCTCGAAatacAATTGTCCTGGACAGCAACAGTTCGTTTCTACAAATGATGTCGGCTGGACAGAAGTTGGTTTACGAGAACGGAGAGATCTCACTCGTTATGGATGATGATCATGGTGATGAAGCGAACGATGAGGGACAAGATTCGAACGATGAAGAGTCTCAGATAGAGCTCCAAGTTTCTGGTGATGAGGAAACTGCGAATGCCATCATAGCGGCTGCTCAGGAACAAGGTGGCGCCTTCATAAAAGTAGAAAGCGGTGAAATGTACCGAGTGAAATCAGTGCAGAGCCATCCTTCAGACAGCGtgccacagacagacagacaaaccaACCCCGCCTCGGAGCTCGTCAGAAGAGAAGGCGACAGCGCTACATACACCTGCCTTGTTTGTCCGCATGCCTCagGTCCAACTTCTAAGTCGCGAGAGATAGGAAACTTCACTGCGAAGGCACAAGAGATGGTGCAACACATGAAATTCGCTCACTCCGCGAAAATTTACATCTGTACTAAGTGCGGCGTTATTATGAGGAATCGGTCAGAATATGCATCGCATTTGGCCCGCCACGGCGCCGCCGCCACCAAACCCCGCTCCTACGACTGCGATCTGTGCAGTAAGAGCTACAACTCGCGTACACTTCTGCAAGAACATATGAACATACACACCGGCAACCGGCCGTACCGCTGCCAAGTGTGCGACAAGACGTTTACCTCCAAGTACACTATGACGGCGCATTTGAAGACGCATCAGGCTCGACCGCGCCCCTTCAAATGCGCCACGTGCCTCAAGTCATTCCTGTCGCAGCAGAATCTGAACCAGCATGAGAAAACTCATCTAGGGATCAAGAGCTTTGTCTGCGGGACTTGTGATAAAGCCTTCGCCACGCAGCACAGCCTAGAAAGCCACTATGTGGTGCACAGCGGGACTAAGGACCACGTGTGTGACGTGTGTGACAAGGGGTTCGCGAGGCGCGCCGAGCTCAAGGACCACGTTAGAATACACACAGGCGAGCGTCCATTCGCCTGCAACGTATGCGACGCCCGTTTCTCGCAGCGTTCGAACCTGCACTCGCACAAGCGAGCCACGCACCTCAACGACAAGCGACACGCCTGCCCCGACTGTCCCAAGCGGTTCAAACGACGCAGACTACTCCAATACCACATAAAGGCCGCGCACACGGGCGAGAGGCCCCTACTCTGCGAGGTCTGTCACACGACCTTCGTGTACCCCGAGCATTACAAGAAGCATATGCGGATACATAGCGGGGAACGGCCTTACTACTGTGAGATTTGCGGCAAAGCCTTCAACTCCCGCGACAACCGAAACACGCACCGCTTCGTCCACAGCGACAAGAAACCGTACGAGTGTCTCGCGTGCGGCGCCTCTTATATGCGGAAACGGATGCTCGTCGCGCATATGAACGCTAATccgactgtacgtaTCTATACTAAACCGTACGAGTGTCTCGCGTGCGGCGCCTCTTATATGCGGAAACGGATGCTCGTCGCACATATGAACGCTAATggtcATCTAGCAGAATCAATTGTGGTTAACCAACCTCGAGTTACGAGAGTCAATGAAGGCATGACAAACGAAAATGGCAGCATATTACAGTTCATACAAGTGAAGATGCCCGATGGGAAAGATGGGTGGGTGGCACTCAATGACTGA
Protein Sequence
MKSCLVCGSPGPFGRDYVLNVFDENNTTCERKLTEALSDMIDKELKEDSVHTTILCKECLDLCINYDMYRANMAVIKTTISKQFYETLEKLTIAIAPVVTPKKEIKGKFVVPASKLQPLPADYQLNLGKIAALASSTQAKNQKPLLNLKVTIGNSVLTQCLTTSTVKMMKPTELSNSKNINVIADWNDSLPSEIFSSNDNNEDMEIDEECNVAVPVSENDPVMIDANNIKNENSENPQYINAENFELLYEGQEDGEPRKTVPVTAVVTRTCAKCHRSAVEGKGMRFHRFPLPGKYGPARARVWAEYCYPEGNWSNMKSLEQLSRNTIVLDSNSSFLQMMSAGQKLVYENGEISLVMDDDHGDEANDEGQDSNDEESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSHPSDSVPQTDRQTNPASELVRREGDSATYTCLVCPHASGPTSKSREIGNFTAKAQEMVQHMKFAHSAKIYICTKCGVIMRNRSEYASHLARHGAAATKPRSYDCDLCSKSYNSRTLLQEHMNIHTGNRPYRCQVCDKTFTSKYTMTAHLKTHQARPRPFKCATCLKSFLSQQNLNQHEKTHLGIKSFVCGTCDKAFATQHSLESHYVVHSGTKDHVCDVCDKGFARRAELKDHVRIHTGERPFACNVCDARFSQRSNLHSHKRATHLNDKRHACPDCPKRFKRRRLLQYHIKAAHTGERPLLCEVCHTTFVYPEHYKKHMRIHSGERPYYCEICGKAFNSRDNRNTHRFVHSDKKPYECLACGASYMRKRMLVAHMNANPTVRIYTKPYECLACGASYMRKRMLVAHMNANGHLAESIVVNQPRVTRVNEGMTNENGSILQFIQVKMPDGKDGWVALND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-